Fragaria vesca (woodland strawberry): 101294129
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Entry
101294129 CDS
T02666
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101294129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101294129
03009 Ribosome biogenesis [BR:
fve03009
]
101294129
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101294129
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
101294129
Pre-60S particles
101294129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT_GCN1
HEAT
TPR_IPO5
IBN_N
TPR_IMB1
TOR1L1_N
HEAT_MROH2B_C
HEAT_2
TPR_DNAAF5
CEP104-like_TOG
HEAT_MROH2B_1st
Ltn1_1st
Motif
Other DBs
NCBI-GeneID:
101294129
NCBI-ProteinID:
XP_004290745
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Position
LG2:17654989..17667112
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AA seq
892 aa
AA seq
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MAAASATWQPQKEGLTAICGLLEQQISPSSSADKSQIWHQLQTYSQNPEFHNYLVFILTR
AQGTSVEIRQAAGLLLKNNLRNAYSNMDPAYQQYIKSELLPCLGAADRHIRSTVGTIISV
VVQLGGVLGWPELLQALVTCLDSNDVNHMEGAMDALSKVCEDIPQVLDSDVPGLPERPIN
IFLPRLLKLFQSPHSSLRKLSLGSVNQYIMLMPAALYASMDQYLQGLFVLANDPSPEVRK
LVSAAFVQLIEVRPAFLEPHLRNLIEYMLQVNKDTDEEVALEACEFWSAYCEAQLPPEIL
REFLPRLIPILLSNMAYAEDDESLVDAEEDGSVPDRDQDIKPRFHSSRFHGSDGGEEEDD
DIVNVWNLRKCSAAAVDILSNVFGDEILPTLMAFVQAKLSNSDDETWKEREAAVLALGAV
AEGCIIGLYPHLNEIIAYLIPLLDDKFPLIRSISCWTLSRFSKFILEGVEHQQGYERFDK
VLLGLLRRILDNNKRVQEAACSAFATLEEEAGDVLAPRLETILQHLMCAYGKYQRRNLRI
VYDAIGTLADAVGVELNRPNYLEILMPPLIAKWQQLANSDKDLFPLLECFTSISQALGAG
FSPFAEPVFQRCISIIQSQQVAKVDPVSSGVQYDKEFIVCALDLLSGLTEGLGSGIESLV
SQSNLKDLLLNCCMDDASDVRQSGFALLGDLARVCPVHLRPRLPEFLDAAAKQLNNPKLK
ETISVANNACWAIGELAVKVHQEISPIVLTVMSSLVPILQHSEALNKSLIENSAITLGRL
AWVCPELVAPHMEHFMQPWCIALSMIRDDIEKEDAFRGLCALVRTNPSGALSSLVYMCNA
IASWHEIRSEELHNAVCQVLHGYKQMLVNGAWEQCMSALEPKVKEKLSKYQV
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgagtgccacgtggcagccacagaaggaggggctgacggcgatctgcggg
ctactggagcagcagatatcgccgtcgtcctccgctgacaagtctcagatttggcaccaa
ctgcagacctactctcagaaccctgagttccacaattaccttgttttcattctcacgcgc
gctcagggtacatcagtggagattcgacaagccgcggggctgctgttgaaaaacaatctt
agaaatgcttatagcaacatggatcctgcatatcagcagtatataaagtcggagttgctg
ccttgcttgggagcagcggataggcacatcaggtctacggtagggacaattataagcgtt
gttgtgcaactagggggagttttgggatggccggaattgctgcaagctcttgtgacttgt
ttagacagtaatgacgtgaatcacatggaaggtgctatggatgcattgtccaaggtatgt
gaggatatacctcaggtgcttgattcagatgtacctgggttgcctgaacgtcccatcaac
atattccttcctagattgcttaagcttttccagtcaccacattcatccttgagaaagctt
tccctgggttctgtaaatcaatacattatgttgatgccagcagctttatatgcatctatg
gatcagtatcttcagggtttgtttgtccttgctaatgacccttctccggaagttaggaaa
ttggttagtgcagcatttgttcagctgattgaagttcgtccagctttcttggagccacat
ttgaggaacctaattgaatacatgttgcaagtcaacaaggacactgacgaagaagttgcc
cttgaagcctgtgaattctggtctgcatattgtgaggctcagttaccgcctgagattttg
agagagtttttgccccgtctaattccgattttgttgtccaacatggcatacgcggaggat
gatgagtcccttgtagatgccgaggaggatggttctgtcccagaccgtgatcaggatatc
aaacctcgttttcattcatcacggtttcatggatctgatggtggggaagaagaggacgat
gatattgtcaatgtttggaacttacggaaatgcagtgcagcggctgtcgatatcctgtca
aatgtgtttggcgatgagattctcccaacattgatggcatttgttcaggccaagttgtcc
aacagtgatgatgaaacatggaaagaaagggaagctgctgtattggctctaggtgcagta
gctgaaggttgcattattggtctttatcctcatttgaatgagatcattgcgtatcttatt
cctcttttagacgataagtttccacttataaggagtatatcctgttggacactgtcacgt
ttcagcaagttcattcttgagggtgttgaacatcaacaaggttatgagcggtttgacaag
gttcttctgggtctcttgagaagaatattagataataacaagcgagtacaggaggctgct
tgctcagcttttgcgacccttgaagaggaggcaggcgacgtgttggcaccacgcctggaa
actattttacagcaccttatgtgtgcttatgggaaatatcagaggcggaacctaagaatt
gtatatgatgccataggaactctagcagatgctgttggtgtggagttgaatcgccccaat
tatcttgaaattctgatgccaccgttaattgcaaagtggcaacaacttgcaaattcagat
aaagatctgtttccattgctcgagtgcttcacttctatttcgcaggcactgggtgccgga
ttctctccatttgctgagccggtgtttcagaggtgcataagcatcatacagtcccaacaa
gttgcaaaggttgatccggtatcttcaggggtccagtatgataaagaatttattgtatgc
gctcttgatctgctttctggacttacagaaggtcttggtagtggaatagaaagtttggtt
tcacaaagcaatttgaaggacctgcttttgaattgttgcatggatgatgcttcggatgtt
cgacagagtggctttgccttacttggggatcttgcaagagtatgccccgtccatttgcgt
cctcgtttgcctgaatttcttgatgctgcggccaaacaactgaataatcctaagctgaaa
gaaactatttcagtggcaaataatgcgtgttgggccattggtgagttagcagtgaaggtt
catcaagaaatttctccaattgttttaacggtcatgtcttccttagtccccatactgcaa
cattcagaggcgctcaacaagtcactaattgaaaacagtgctatcacacttgggaggctt
gcatgggtttgtccagagcttgtggctccgcatatggagcatttcatgcaaccatggtgc
attgctttgtcaatgatacgcgatgatatagaaaaggaggatgcattccgaggtctatgc
gctttggttagaacaaatccgtctggagcattgagttcacttgtatatatgtgcaatgct
atagccagttggcatgaaataaggagtgaagaacttcataatgcagtttgccaggtgttg
catggttataagcagatgcttgtgaatggagcgtgggaacagtgtatgtctgctttggag
ccaaaagtcaaggaaaaattgtcaaaataccaagtgtaa
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