Fragaria vesca (woodland strawberry): 101294308
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Entry
101294308 CDS
T02666
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
101294308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101294308
Enzymes [BR:
fve01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
101294308
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
101294308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Ribosomal_L37e
DUF2635
Motif
Other DBs
NCBI-GeneID:
101294308
NCBI-ProteinID:
XP_011458916
LinkDB
All DBs
Position
LG1:4312192..4325146
Genome browser
AA seq
1664 aa
AA seq
DB search
MKIRGFLSSQVPTESVRAVSFSFFTDEEASKQSVVKITKPDLVDELGTPVQGGLYDPAMG
PLDDRSHTCCRTCGQNAYNCQGHFGHIDIVLPVYNPLLFNHLYKLLQRTCFNCCCFRTSR
EQVQKCVSQLELVMRGDVVAAKRLDSDSSNHHSYLKEGGEGNDSERDRHSKPERWTSLQF
TEAMSILNCSLETQQTCKNCGHKNPKITKPTFGWFERSGAENARKNVIRKCKLVGPLTVQ
EEGESCGNDVDAGISDISCASSFVTQDTATKKSEEQESIVLDQYFKQKEALSGDLTPKKV
KEIMSLLWTKEAQLCSYLSDIQRQGVERKGHYMFFLESVLVPPIKFRPPAHSGDSVMEHA
QTVSLGEVVRANSYLKDALDKNKVSQIIQCWKRLQDCINLMFDGQGGILEKKAGMFRQKL
MGKRVNFACRSVISPDPYLAVNEIGIPPIFALTLTYPERVTPWNVFKLRNAIVNGSEIHP
GATHYIDKTSIKLPQKRRERLLLSRKLPSSKGAGTQHGKGSDYENKIVLRHLQDGDIVLV
NRQPTLHKPSIMAHIVRVLKGEKTLRMHYANCSTYNADFDGDEMNVHLPQDEISRAEAYN
LVNANNQYVKPTSGVPIRALIQDHIISSLFLSEKDTFFDLDEMNQLLYSSSVSACGSETF
SGKPGQKVLMSNSEDAMQLPLPAIWKPVRKWPGKQIITTLLNRITSGSPPLTFEKEAKLP
SGFFNCKTPVEEERSAKGHRAKEKQSRIKEAGKDDSREKEEPDESKLLIYKNNLVRGVID
KNQFGDYGLVHNVQELYGSEAAGKLLSAFSRLYTVYLQMHGFTCGVDDLLLLQSKDKKMK
EQLESCEELGEKVIREFIGVRQNERKGALILQSDIEEFLRNNGESVSEMLDRKMTSELNK
KISNSDVFKQLFQKGLSKPSVKNCMYLMTSSGAKGGVANLQQIAAYLGQQELEGKRVPQM
VSGKTLPCFPPWDWSPRAGGFIIDRFLTGLHPQEYYFHCMAGREGLVDTAVKTSRSGYLQ
RCLIKNLECLKVSYDYTVRDADGSIIQFRYGEDGIDVHLTSFVQKFEKLANNKEMFDKRF
GREIDKFNPYIDELPPALKRKAEMSGPDFSLKEKNANLKLMEHKFLSSLAQPGEPVGILA
AQSVGEPSTQMTLNTFHNAGRSEMNVTLGIPRLQEILMTASIDIKTPVMTCPLRMGKAED
AKSLAVRLKRITVADIIESMKVNIKPFTHQDHQTCRVYELEMTFFIPEHLSKFSEDWEEL
LKVKFVRALEDAIQNHLVLLSKISGIKDIKADSLPKASNETDEDISCNISQHEEEGGDDD
NLDDSGEGAEDFGLDAQKRKRQGTDEMEYDDDWEDELNEGHHSDGFDNEIDNGEIDVEID
KDGVTGISDANDKMQESRSTGGISKPHSKGKKTKSRDKIKKKTSAKLVRKEYDRATFVSA
KGFHFEIHFKFTNEPHILLDQIARKTARNVYVKSSGNILDCQDIDIYGNEDQVFCCWNDP
RNKLSGEKNPSEEEKKMRALQTAGVDFATLWKLQDVLDVNYICSNNIHAMLNTYGVEAAR
ETIIKEISNVFKVYGISVNIRHLSLIADYMTHSGGYRPMNRFGGIAESTSPMNKMSFETA
SKFIQEAAYHGEKDDLETPSARTCLGLPVKVGTGCFDLMHKMEI
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcagaggttttttgtcatcgcaggttccgacggagtcggtgagggcggttagt
ttcagcttctttacagacgaagaggcgtcaaagcagagtgtcgtcaagattactaaaccg
gacttggttgatgaattaggaacgccggtgcaaggtggcctttatgatccggcaatgggt
cctctcgacgacagaagccacacatgttgcagaacatgtggccagaacgcgtataattgc
caaggccattttggtcatattgacattgttttgcccgtctataatccattgttgttcaat
catctttacaaacttctacaaagaacctgcttcaattgttgctgttttcgaacaagccga
gagcaggttcaaaaatgtgtttcccaattggaactcgtgatgagaggtgatgttgttgcg
gcaaagagattagactctgactcgtctaatcatcactcatatctcaaggagggcggggaa
ggaaatgatagtgagagagacaggcattcgaagccggaaagatggacatctcttcagttc
acagaagccatgtctattttgaattgttctctggagacacaacaaacgtgcaagaattgt
ggacacaagaatcctaaaatcactaaaccgacttttggttggtttgagaggagtggggct
gaaaatgctagaaaaaatgtaatcagaaaatgcaaactggtaggacctttaactgttcaa
gaagagggtgaatcttgtggcaacgatgttgatgcaggcatatctgatatatcttgtgca
tcctcatttgtgactcaagatactgcaacgaagaagagtgaagaacaagagagcatagtg
ctggatcagtattttaagcagaaagaagccttatcaggagatcttacaccaaaaaaggta
aaagaaataatgagccttttgtggacaaaagaggctcaactctgctcttatcttagtgat
atccaacgccaaggagtggaaagaaaaggtcactatatgtttttcttagagagtgttctt
gtaccacctatcaaatttcgtcctccggctcatagtggtgattctgtgatggagcatgcg
caaactgtttcattaggtgaggtggttcgggcaaattcgtacttgaaagatgctctggat
aagaacaaagtgtcgcagataattcagtgctggaagcgacttcaggattgtattaatcta
atgtttgatggtcaaggtggcattctggagaagaaggcaggcatgtttcgccagaaactg
atgggaaagagggttaattttgcatgccggtctgttatatccccagacccctatttagct
gttaatgagattggaattccaccaatctttgcattgacattaacatatcctgagagagtt
actccgtggaatgttttcaagttgagaaatgctattgtcaatggttctgaaatccatcct
ggagctacacactatattgataaaacatctatcaagttgcctcaaaagcggagggagcgc
cttttattgtcaagaaagttaccttcttcgaaaggggcagggacacaacatgggaaggga
tctgactacgaaaacaaaattgtacttcgtcacttgcaagatggggacattgttcttgtt
aatcgccagcctacacttcacaaacccagtataatggctcatatagttcgtgtgttgaag
ggggagaaaacattacgcatgcactatgcaaattgcagtacatacaatgcagattttgat
ggtgatgaaatgaatgttcatttgccacaagatgaaatttctcgtgctgaagcttacaat
ttggtgaacgcaaacaatcaatacgtaaagcccactagtggtgttcccattcgagcctta
attcaggaccatatcataagttctctgttcctttcagaaaaggacacctttttcgacttg
gatgaaatgaatcagcttctgtatagttcttctgtttcagcatgtggttcagaaactttc
tctggcaagccaggtcaaaaggttctaatgtccaactctgaagatgcaatgcagctcccc
cttcctgcaatttggaaaccagtgcgtaagtggcctggcaagcagatcatcactaccttg
ctaaatcgaattacaagtggttctcccccacttacttttgaaaaggaagcaaaacttcca
tctgggtttttcaactgtaagactcctgtagaagaagagagatctgctaaaggtcaccga
gcaaaagagaagcagtcaagaataaaagaagctggtaaagatgattcaagggaaaaagag
gagccagatgagagcaagttgttaatctacaaaaacaacttggtgcgtggagtgattgac
aaaaaccagtttggtgattatggtttggtccataatgtgcaggaactctatggttcggaa
gctgcaggaaaattgctttctgcttttagccgtttatatactgtttatttacagatgcat
gggttcacatgtggagttgacgatcttttgctattacaaagcaaagacaaaaaaatgaag
gaacaacttgaaagttgtgaagagcttggtgaaaaagttatccgtgagtttattggggtc
agacaaaatgaaagaaaaggtgcattgatattgcaatcggatattgaagaatttttgcgc
aacaatggagaatctgtgtcggaaatgttggacaggaaaatgacaagtgaacttaataag
aaaatctccaattctgatgtcttcaaacaactgtttcagaaaggtttatcaaaaccatct
gttaagaattgtatgtatcttatgacaagctctggggctaaaggtggtgtggcaaatctc
caacaaattgctgcatacttgggtcagcaagagctagaaggcaagcgagtccctcaaatg
gtttctggaaaaaccttaccatgcttccctccatgggattggtcacctcgagctggaggt
tttattattgatcgttttcttaccggtcttcatcctcaggagtattattttcactgcatg
gctggccgtgaagggctggttgatacagctgttaaaacttctcgtagtggatacttgcaa
agatgcttaatcaagaatctcgaatgccttaaggtttcttatgactacactgttcgcgat
gctgatggttcgattattcaattccgatatggggaggatggtattgatgtccatttgaca
agttttgttcaaaaatttgaaaaactggcgaataataaagaaatgtttgacaagagattt
ggtcgtgaaattgataagttcaatccctatattgatgagttgcctcccgctctcaaaaga
aaagcagagatgtcaggtcctgatttctctttgaaggaaaagaatgccaacttgaagtta
atggagcacaaatttctcagcagtcttgcgcaaccaggagaaccagttggtattcttgct
gctcagtctgttggagaaccatcaacacaaatgactctgaataccttccataacgctggg
cgaagtgaaatgaatgtgactcttggcattcctcggctccaagagatcttgatgactgct
tcaattgatatcaagactccagttatgacatgtccattgagaatggggaaagcggaagat
gctaaaagtctagctgttaggttgaagaggatcaccgtggcagacataatagagagcatg
aaagtaaatattaaaccatttacacatcaggaccatcagacctgccgtgtttatgagctt
gagatgacgttttttataccggaacatctttcgaaattttcagaagattgggaggaactc
ctaaaggttaaatttgtcagggctttggaggatgccatacaaaatcatcttgttttgctt
tctaaaattagtggtataaaagatataaaggctgattcactgccgaaggcatcaaatgag
acagacgaagatatttcttgtaacatatcccagcatgaggaagaaggtggcgacgatgac
aatttagatgacagtggtgaaggagctgaggattttgggttggatgcacaaaaacgaaag
cgacagggtacagatgagatggagtatgatgatgactgggaggatgaattgaatgaaggt
catcattctgatggatttgacaacgaaattgataatggggagattgatgttgaaattgat
aaggatggtgtgacagggatctcagatgctaatgataaaatgcaagaaagtcgttcaact
ggaggtatatctaagccacactcgaagggaaaaaagaccaaatcaagagataaaataaaa
aagaagaccagtgcaaagctagtaagaaaggagtatgacagggcaacttttgtgtcagcc
aagggcttccactttgagatccattttaaatttaccaatgaacctcatattcttttggat
cagattgctcggaagacagcccgaaatgtttatgtcaaaagctctggcaatattttggat
tgtcaagatattgatatttatggtaatgaagatcaagttttctgctgctggaatgatccc
agaaataaattatcgggtgaaaagaatccctcagaagaagaaaagaagatgcgagccttg
caaacagcaggcgtggattttgctactctatggaaactgcaagatgttcttgatgtcaac
tatatatgttccaacaacattcatgccatgctgaacacttacggagtagaagctgccaga
gaaactatcatcaaagaaataagtaacgttttcaaggtgtatgggatatctgtcaatatt
agacacctttcactgatagctgactacatgactcatagtggtggttatcgtccaatgaac
agatttgggggaatagcggagtctacatctccgatgaataaaatgtcatttgagacggct
tccaagttcattcaggaagcagcatatcatggggagaaggatgacttggaaaccccatct
gctaggacctgtcttgggctgccggtgaaagtgggtactggatgttttgatttgatgcac
aagatggagatttag
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integrated database retrieval system
