Fragaria vesca (woodland strawberry): 101294621
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Entry
101294621 CDS
T02666
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101294621
03036 Chromosome and associated proteins [BR:
fve03036
]
101294621
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
101294621
Chromosome and associated proteins [BR:
fve03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
101294621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HHH_9
HTH_44
Tex_central_region
SH2
S1
HHH_3
Motif
Other DBs
NCBI-GeneID:
101294621
NCBI-ProteinID:
XP_011470969
LinkDB
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Position
Un
Genome browser
AA seq
1620 aa
AA seq
DB search
MGKAVISDDEDEVELDEDDREPIDGDTVDRDGADEDEDEEDEGPDEYEKDDFIVDDVDEE
DEQEEEEKADSDEERQKKKKRKKKEEYVLDEDDYELLEDNNVIAPRRKGQFKRLKKAQRH
AQGDVGGLSDEEEFHGTGKGGRTAEEKLKFSLFGDEEGPPLEDIAEEEEPAEAEDDGEDE
MADFIVDEEFDEAGVPVRQKKLKKKKSRQAAGVSSSALQEAHDIFGDVDVFIRQRQQGLD
LSEWKEKKLEDEFEPIVLSEKYMTMKDDQIREIDVPERIQVYEESSGFLPLDEKSIDDES
TWIFNQFASGTVPFFGKTGLGNFISRDDIIGFLNLHHVQKLDVPFIAMYRKEECPSILKD
PEHIDMDDQNEKASTLKWHKVLWSIQDLHRKWLLLQKRKSALQSYYEKRFDEESRRIYDE
TRLTLNQQLFESIMKSLKAAESEREVDDVDTKFNLHFPAGEIGVDEGQYKRPKRKSLYST
CSKAGLWEVASKFGYTSEQFGLQLSLEEMRMDELEDAKETPEELSSNFTCAMFETPQEVL
KGARHMAAVEISCEPCVRKYVRSNYLDMVELSTSPTPDGNAAIDASHQFAGVKWLQRKPL
NRFEDAQWLLIQKAEEEKLLQVTIKLPEDRLNKLMSDFNEYYLSDGVSKSAQLWNEQRKL
ILQDALFRFLLPSMEKEARALLTSRAKSWLLTEYGKVLWNKVSVGPYQRKENDISTDDEA
APRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSQNVNDQQRKKNDQERVLKFM
TEHQPHVAVLGAANLSCVRLKEDIYEIIFKMVEENPRDVGHDMDGLTIVYGDESLARLFE
NSRISSDQLPAQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPMENFLTQDEK
YSMIEQVMVDVTNQVGLDINLSISHEWLFAPLQFISGLGPRKAAFLQRSLVRSGAIFTRK
DFLTAHGLSKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVFE
VDGGNDDEDAMEMAIEHVRDRPAYLKSLDVEAYAKSKERENKIQTFYDIKRELIQGFQDW
RKKYEELSQDEEFYMISGETEDTLAEGRIVQATVRRVQAQKAICALESGLTGMLTKEDFS
DDSRDISDLSERLNEGDILTCKIKSIQKNRYLVFLVCRESEMRHNRDQYIKNLDTYFHEG
RRSLQTEQEKARKEKELAKKHFKPRMIVHPRFQNITADEAMKFLSDKDPGESIIRPSSRG
PSYLTLTLKVYDGVYAHKDVVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDP
LVSHLKAMLNYRKFRRGTKAEVDELLKIEKLEFPMRIVYCFGISHEHPGTFILTYIRSTN
PHHEYVGLYPKGFKFRKKMFDSIDRLVAYFQKYIDEPQHESGQSIRSVAAMVPMRSPATA
GSSGASAGSGWGGINNEGGWSGQSFDRDRSSTPSSRTGRNDYRNGGGRDGHPSGLPRPYG
GRGRGRVTYNDTWGSDAKDGNDGLGNFPGAKVQNSPGREAFPGVWGTDGSSSGGGSGWAG
GGASGWGKESGGGTGGWGGGANDAAPDNEHSGWGSDSKKKGSSDGTSGWGSQSGGGGGGW
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaagctgtcatctccgacgacgaggatgaggtcgagctcgacgaggacgatagg
gaaccgatcgacggggacacagtcgaccgtgacggcgccgacgaagatgaagatgaagaa
gacgaagggccagatgaatatgagaaggacgattttatcgtagacgatgttgatgaagag
gatgagcaggaggaagaagagaaggcggacagtgatgaggagaggcagaagaagaagaaa
agaaagaagaaagaggaatatgttcttgatgaagatgactatgagctcctggaggacaat
aatgtgatagcccctcgcagaaagggacaatttaagcggctgaaaaaagctcagaggcat
gctcagggggatgttggcggattatctgatgaggaggagtttcatggtactggtaaaggg
ggaagaactgcagaggagaagcttaagttctcattatttggtgatgaggaaggtcctcca
cttgaggacattgctgaagaggaggaaccagctgaagcggaagatgatggagaagacgaa
atggcagactttatagttgatgaagagtttgatgaggctggtgttcctgttagacagaag
aagcttaagaaaaagaaatctaggcaggcagcaggggtatcttcatctgctctgcaggaa
gcccatgatatattcggtgatgttgatgtttttattcggcaacgtcagcaaggtttggat
ttgagtgaatggaaggaaaaaaagcttgaggatgaatttgaaccgattgttctttcggaa
aagtatatgacaatgaaggatgaccagattcgagagattgatgtcccagaaagaattcag
gtatatgaagaaagcagtggttttcttcctcttgatgaaaagagcatagatgatgagagt
acctggatattcaatcaatttgcaagtggtacagttcctttttttggcaagacaggcctg
gggaattttataagcagggacgacatcatcggattcttgaacttgcaccatgtgcagaag
ttggatgttccttttattgcaatgtatcggaaggaggaatgcccgagtatattgaaagat
ccggaacacattgacatggatgatcaaaatgagaaagcatccacactaaagtggcacaag
gtactttggtcaattcaggacttgcacagaaaatggctgctgcttcagaagcggaaaagt
gcactgcaatcttactatgaaaagcggtttgatgaagaatctcgacgcatatatgatgag
accagactaactttaaatcagcaactttttgaatcaattatgaagtcactaaaggctgca
gaatcagagagagaagttgatgatgtggacaccaaatttaacctacatttccctgctggt
gagataggtgtggatgagggccaatataagaggcctaagaggaagtcactttatagtacc
tgcagtaaggctggcttgtgggaggttgccagcaagtttggttacacctctgaacagttt
ggtttgcagttatcactagaggaaatgagaatggatgagctggaggatgcgaaagagact
cccgaggaattgtcttcaaacttcacgtgtgcaatgtttgagacgccccaagaagtactc
aaaggagccaggcatatggctgctgttgagataagctgtgagccgtgtgtccgtaagtat
gttcggagcaactacttggatatggttgagttgtccacaagcccaacaccagacggaaat
gctgcaattgatgcttcgcatcagtttgcaggggtgaagtggttgcaaagaaagccatta
aatagatttgaggatgcacaatggctgcttatccagaaggctgaagaggagaagcttctt
caagttactattaagctaccggaagacagattaaacaagttgatgagtgactttaatgag
tactatcttagtgatggtgttagtaaatctgcacaactgtggaatgagcagcgaaagttg
atattgcaggatgctcttttccgttttcttctaccttcaatggagaaagaggcaagagcc
ttgttgactagtagggcaaaaagctggttactgacggaatatggaaaggttttgtggaat
aaagtctctgtgggaccatatcaacggaaagagaatgacattagtacagacgatgaagct
gcacctcgagtcatggcttgctgttggggccctgggaagccagcaaccacttttgttatg
ttagattcatcgggggaggtgctagatgtgctttacacggggtctctcaccttacgctcc
cagaacgttaatgatcagcaacggaagaagaatgatcaagaacgtgtattgaagttcatg
actgaacaccaaccacatgtggctgttcttggagctgctaatttgtcttgtgttcgcctt
aaagaggatatttacgagataatttttaagatggtggaggagaatcctagagatgttgga
catgatatggatggtctaaccattgtctatggggatgaatctttggctcgcctgtttgaa
aattctcgcatttcatctgatcagctacctgcacaatcaggcattgtgaagcgtgctgtg
gctcttgggcgttatcttcaaaatcctttggcaatggttgccactctatgtggaccagga
agagaaatcttatcttggaaactcaatcctatggagaactttctcacccaggatgagaag
tattcaatgattgaacaggtgatggtagatgttacaaaccaggtaggcctcgacataaat
ttgtctataagccatgaatggttatttgcacctttgcaattcatttctgggcttggacct
agaaaggcagcatttttgcagcgatcattggtaagatctggtgcaatatttactcggaag
gactttttgacagcacatgggttaagtaaaaaggtgttcgttaatgcagttggattcttg
cgtgttcggcgcagtgggttggctgctagcagcagccaatttatcgatctgttggatgat
acaagaattcatccagaatcctatattcttgcacaagaattagccaaagatgtttttgaa
gttgatggtggcaatgatgacgaggatgctatggagatggctatagaacatgttagggat
cgacctgcttatctaaaaagtcttgatgtcgaagcatatgccaaaagcaaagagcgtgag
aataagatacaaacattttatgacatcaaaagagaattgatacagggttttcaggattgg
cgtaagaaatatgaagaactaagtcaagatgaagaattctatatgatttcaggtgaaact
gaagatacccttgctgaaggaagaattgtacaggcgacggttcgaagggtgcaagctcaa
aaagcgatttgtgcacttgaatctggactgactggtatgcttacgaaagaagatttttca
gatgattcgagggacatttctgacttatctgagagactgaatgagggtgacattctcact
tgcaagatcaaatctattcaaaagaataggtatctggtgttcctagtttgtagagagagt
gaaatgagacataaccgcgatcaatatattaagaatctcgatacctatttccatgaaggc
aggagaagtctacagactgagcaagaaaaagctcgtaaggagaaggagctggcgaaaaaa
catttcaagcctaggatgattgttcatcctcgattccagaatattacggctgatgaagca
atgaagttcttatctgataaagatcctggggaaagtattattcgtcctagttctcgtggg
ccttcatatttgaccttaaccctcaaagtttatgatggagtttatgctcacaaagatgta
gttgaaggtggaaaggaacacaaggatatcaccagcttactccgtattggaaagaccctg
aaaataggagaggacacttttgaggatttggatgaggtaatggatcgttacgttgatccc
ctggtgtctcacttgaaagcaatgctaaattatcgcaaattccgacggggcacgaaagct
gaagttgatgaacttttgaagattgaaaaattggagtttcctatgaggattgtttattgt
ttcgggatatcacatgagcatccagggactttcattctgacctatatacggagtacaaat
ccacaccatgagtatgttgggctgtatccgaaggggttcaagttcagaaaaaagatgttt
gatagcattgatcggcttgtagcttacttccagaaatacattgatgagcctcaacatgag
tccggacaatctataaggtcagttgctgctatggtgcctatgcgaagccctgcaactgcg
ggttcttcaggtgcatccgcaggcagtggatggggtggtataaacaatgagggtggttgg
agtggccagtcatttgacagggataggtcttctacacctagttcccgaacaggtagaaat
gattacagaaatggtggcggtcgagatggacatccaagtggcctacctagaccatatggg
gggcgtggtcgtggtcgagtaacatataatgatacatggggttcagatgcgaaggatggc
aatgatggcttgggcaactttccaggtgcaaaggttcaaaactcacctggcagggaagct
ttcccaggtgtctggggtacagatggaagtagcagtggaggcggcagtggctgggctggt
ggtggtgcaagtggttggggtaaagaaagtggtggtggcacaggaggatggggtgggggt
gcaaatgatgctgcccctgataatgagcattcaggatggggttctgactcaaaaaagaag
ggttcaagcgatggaacttcaggatggggctcgcagagtggaggtgggggtggtggttgg
taa
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