Fragaria vesca (woodland strawberry): 101294962 Help Entry 101294962         CDS       T02666                                  Name (RefSeq) pre-mRNA-splicing factor prp12   KO K12830   splicing factor 3B subunit 3 Organism fve  Fragaria vesca (woodland strawberry) Pathway fve03040   Spliceosome Brite KEGG Orthology (KO) [BR:fve00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     101294962  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:fve03021]     101294962    03041 Spliceosome [BR:fve03041]     101294962    03036 Chromosome and associated proteins [BR:fve03036]     101294962 Transcription machinery [BR:fve03021]  Eukaryotic type   RNA polymerase II system    Coactivators     SAGA/TFTC/STAGA complex      101294962 Spliceosome [BR:fve03041]  Complex A   U2 snRNP components    U2 snRNP specific factors     101294962  Complex B     101294962  Complex C    U2 SnRNP specific factors     101294962 Chromosome and associated proteins [BR:fve03036]  Eukaryotic type   Histone modification proteins    HAT complexes     STAGA complex      101294962     TFTC complex      101294962 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A Motif Other DBs NCBI-GeneID:  101294962 NCBI-ProteinID:  XP_011467138 LinkDB All DBs Position LG6:complement(19240875..19252962) Genome browser AA seq 1393 aa AA seqDB search MAVSEEECSSANSRSSSSTSSSSSSSHFLSKCVLRGSVLLHVLSAHLRSPSSNDIVFAKE KSIELVIIGEDGIVQSVCEQPVYGTIKDIAVLPWNDRFRGRNPQMLGKDLLVVVSDSGKL SVLSFCNEMHKFFPVTQVQLSSPGNSRGQLARMLAIDSSGCFIAASAYVDRLAMFSVSMS GGSDIIDKKIVYPPENDDDVNAARVQKNSISGTIWSMSFISQDPNQSKGHNPILAVVINR SGAVLNELLLLGWNIREQDIYVISQYVEDGPLVLSIAEVPHSYGFAFLFREGDAILMDLR DANNPYCVYRTSPNFLSNVVDEANFVQESSKGCDLSRVLQVDDEGGLFNVAACALLELSD LDPMCIDGDKYNVNVTHKFVCSWSWEPWNVKNQRMIISADTGEYFMIEIIFNPDGIKVLE SECLYKGLPCKALLWVEGGFLAALVDMGDGMVLKMENGTLHYISPIQTIAPVLDMSVVDY HDEKHDQMFACCGVAPEGSLRIIRSGITVEKLLRTAPIYQGITGTWTLRMKMTDTYHSFL VLSFVEETRVLSVGLSFTDVTDSVGFQPDVSTLACGVVNDGMLVQIHKSAVRLCLPTQSA QSDGVPLPSPVCTSWFPENMSISLGAVGHNLIVVSSSNPCFIFILGVRMYSVHHYEIYEM QHLRLQNELSCISIPQNCYEKKVTGFPNSLVDESSVPAPPFGVDISNIFVIGTHKPSVEI LSLAPSEGLRVLASGAISLTNTLGTAISGCIPQDVRLVLVDRLYVLSGLRNGMLLRFEWP TASRMPSSVVPQSPVDWLSVSTDTVLSSVSAANSYGRQVYTTKLSENIKDKFPVDLQLIA IRRIGITPVFLVPLSDSLDGDIIVLSDRPWLLHTARHSLSYTSISFQSSTHVTPVCYVEC PKGILFVAENCLHLVEMVHSKRLNVQKLQLGGTPRRVFYHSESRLLIVMRTNLSDDTCLS DICCVDPLSGSVLSSFKLEFGETGKSMELMRVGSEQVLLVGTSLSSGSAIMPCGEAESTK GRLIVLCLENMQNSDSGSMTFSSKAGSSSLRASPFHEIVGYAAEQLSSSSLCSSPDDTSC DGIKLEETETWQFRLAFSMPWPGMVLAICPYLDRYFLASAGNAFYLCGFPHENSQRVKKW AVARTRFTITSLTAHFTRIVVGDCRDGILFYDYNEDSKKLQQLYCDPYQRLVGDCILMDV NTAVVSDRKGSIAVLSCADYLEDTASPECNLTVSCAYYMGEIAMSIKKGSFSYKLPADDA MKGGDGSIDFAQNGIIVSTLLGSIITFVPISREEYELLEAVQDRLAVHPLTAPILGNDHN EFRSRENPVGVPKILDADMLTQFLELTSVQQEAVLSSPICVRSTVKSRLKFRSSPVPVNQ VVQLLERVHYALN NT seq 4182 nt NT seq  +upstreamnt  +downstreamnt atggcggtctctgaggaagagtgctcctccgccaactccagatcatcctcctccacctcc agctcctcctcctcttctcacttcctctccaagtgcgtcctccgcggctccgttctcctc cacgtcctctccgcccacctccgctccccctcctccaacgacatcgttttcgccaaggag aaatcgattgagctggtgattatcggtgaagatgggattgtacagtctgtctgtgagcag cctgtgtatggcaccattaaagacatcgccgtcctcccatggaatgacagattccgtggc cggaatcctcagatgctggggaaagatcttttggtcgttgtttctgattccgggaagctc tcggttctctctttttgcaacgaaatgcacaagttttttcctgtgactcaagttcaactt tccagtcctggaaactcaaggggtcagcttgcaagaatgctagccattgattcaagtggc tgcttcattgctgctagtgcatatgtagaccggttggctatgttctctgtttcaatgtct ggaggcagtgacattattgataagaaaatagtgtatccccctgaaaacgatgacgatgtg aatgctgctagagtccagaaaaacagtatttcaggtactatctggagcatgagctttatt tcgcaggatcctaatcaaagtaaggggcataatcctatactcgccgttgttataaatagg agtggggcagtccttaatgaattgctattactgggatggaacattagagaacaagatatt tatgttatttctcagtatgtagaagatggacctttagtacttagcattgctgaagttcct cattcgtatggatttgcttttctgtttagggagggtgatgctattttaatggatcttaga gatgccaacaacccttattgtgtctatagaacaagcccgaatttcttatctaatgtggtt gatgaggccaattttgttcaagagtcgtctaaaggatgtgatctgtctagagtacttcag gttgatgatgaaggaggtttatttaatgtagctgcctgtgcgttactggaacttagtgat ttagatcctatgtgtatagatggtgacaaatacaatgtgaatgtgactcacaaatttgtg tgttcatggagttgggaaccatggaatgttaaaaaccaaagaatgatcatttctgctgat acaggagaatatttcatgattgaaattattttcaatcctgatggcattaaggttctagaa tctgagtgtctttacaaaggtttaccatgcaaggcacttctgtgggttgaaggcgggttt ctggctgcactagtagatatgggggatgggatggtcttgaaaatggaaaacggaacactt cattacataagtcctattcaaaccattgccccagtcttggatatgtcagttgtggattac catgatgagaaacatgatcaaatgtttgcttgttgtggagtggctccggaggggtcttta aggatcattagaagcggtatcactgtggaaaagctactacggactgcacctatatatcaa gggattactggtacatggacattacgaatgaagatgactgatacttaccattcatttctt gtcctatcatttgttgaagaaaccagggtactatcagttggcttaagctttactgatgtg acagattcagttggtttccagcctgatgtttctactttggcatgtggtgttgtaaatgat ggaatgctggtccagattcacaaaagtgcagtcaggctctgtctgcccacccagagtgcc caatctgatggtgttccattgccttctccagtttgtacatcttggttcccagaaaatatg agtatcagtttgggtgctgttgggcataatctaattgttgtttcttcatctaatccctgc tttatatttattcttggggtaagaatgtattcagtgcatcattatgagatatacgagatg caacatttgagattgcaaaatgagttatcatgcatctccattcctcagaactgctacgag aaaaaagttacaggttttccaaacagtctggtagatgagagttctgtccctgctcctcca tttggagttgacatcagtaatatctttgttatcggaacacacaagccttcggtggaaata ttgtctcttgcacctagtgaaggtctacgtgttcttgcttctggggcaatctcattaacc aatactttaggaactgctattagtggctgcattcctcaagatgtaaggcttgtattagtt gaccgattgtatgtcctttctggattaaggaatggaatgctgcttcggtttgaatggccc actgcctctagaatgccttcatctgtagtacctcagagtcctgttgattggctttcagtt agtacagatactgttttatccagtgtatcagcagcaaattcttacggccgacaagtatat actactaaattatctgagaatataaaggacaaatttcctgttgatttgcaattgattgct atccgtcgtattggcatcactcctgtattcctggttcctttaagtgattctcttgatggt gatataattgttctcagtgataggccctggttgctgcatactgcaaggcacagcctctca tatacttctatctcatttcaatcttcgacacatgtgactcctgtatgttatgtcgaatgc cctaagggaattttattcgttgcagagaactgtttacatttggtagaaatggtgcacagt aagaggcttaatgtgcagaagttgcaacttggaggaactccgagaagggtcttttatcat agtgaaagcaggctgttgattgtgatgaggactaatctgagtgatgatacatgcttatct gatatatgttgtgtcgatcctcttagtgggtcagtgctgtcatctttcaaacttgaattc ggtgaaacaggaaaatcgatggagttaatgagggtcggaagcgaacaggttcttttggtt ggaacaagtttgtcttctggttcagccataatgccctgtggtgaggctgaaagtaccaaa ggccgcctaattgttctctgtcttgaaaatatgcaaaattcagacagtggttcaatgaca ttcagctcaaaggcagggtcatcttctctacgagcttccccatttcatgaaattgttggg tatgctgcagaacagctttcaagcagtagtctctgtagtagcccagatgatactagctgt gatggtattaaactagaagaaactgaaacgtggcagtttcgtttggctttttcaatgccg tggcctggaatggtgcttgctatctgcccttatcttgatcgctacttcttggcttctgct ggtaatgctttttatttatgtggttttccacatgaaaattcccaaagagtaaagaagtgg gctgtggcaaggacgcgctttacaattacatctttgactgcacattttacaagaattgtc gttggtgattgccgtgatggcatccttttctatgattataatgaggattccaaaaagctg cagcaactttactgtgatccgtatcagagattagttggtgattgcattcttatggatgtc aacactgctgttgtttcagatcgtaagggaagcattgctgtgctttcatgtgcagattat ttagaagatactgcgagtccagaatgtaatttgacagtgagctgtgcttattatatgggt gagatagctatgagcatcaagaagggctctttttcgtataaactgccagctgacgatgca atgaaaggtggtgatggaagtatcgactttgctcaaaacggtattattgtcagtacactg cttggaagcataataaccttcgttccaatatcgagggaggaatatgaactcttagaagct gtccaagatagactggcggtgcatccattaactgctcctattcttggaaatgatcataat gagtttcgtagccgtgaaaatccggtcggagtacccaagattcttgatgcggacatgctc actcagttcctggagctcacaagtgtgcaacaagaggctgtattatcatcacctatttgt gtacgaagcacagtaaagtcgcgtttgaaattccgaagttcacctgttccggtcaatcag gtggtgcaactccttgagcgagttcactatgccctaaactaa

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