Fragaria vesca (woodland strawberry): 101295110
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Entry
101295110 CDS
T02666
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04142
Lysosome biogenesis
fve04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
101295110
04148 Efferocytosis
101295110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fve04131
]
101295110
Membrane trafficking [BR:
fve04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101295110
Hops complex
101295110
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS18_solenoid_2nd
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
Beta-prop_WDR36-Utp21_1st
zf_RING_Vps8_fungal
zf-C3HC4_2
DUF8145
zf-RING_6
zf-RING_2
zf-RING_5
PilZN1
Beta-prop_IFT140_1st
CHP04376
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
101295110
NCBI-ProteinID:
XP_004293465
LinkDB
All DBs
Position
LG3:complement(1832293..1836848)
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AA seq
945 aa
AA seq
DB search
MYQWRKFEFFEEKLAGKCAIPEEVSGKIECCSSGRGKVVIGCDDGSVSFLDRSLHFSYGF
QAHSSVLFLQQLKQRNFLVTIGDDEQISSQQSRCLKVFDLDRIQPEGTSSTSPDCIGILR
IFTNQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVNNVSDK
SQCAITGLGFRVDGQALQLFAVTPSSVSLFILQNQPSRGQTLDQIGGNVNSVAMSDRGEL
IIGRPEAVYFYEVDGRGPCWAFEGEKKFLGWFRGYLLCIIEDQRSGNHTFNIYDLKNHLI
AHSLVVKEVSHLLCEWGNIILIMADKSALCIGEKDMESKLDMLFKKNLYTVAINLVQSQQ
ADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNYLE
KLHEKGLASKDHTTLLLNCYTKLKDVDKLNVFIKSEDGFGEHKFDVETAIRVCRATNYHE
HAMYVAKKAGKHEWYLKILLEDLGRYEEALQYISSLEPSQAGVTVKEYGKILIEHKPVET
IEILMRLCTEDGESAKRGGANGAYLTMLPSPVDFLNIFIHHLQSLMVFLEKYTNKVKDSP
AQVEIHNTLLELYLSNDLNFPLMSQASNGGEISVRSTRPGAGAMSNGKFVADGKDLTQEM
DRMERQEKGLRLLKSAWPSELEHPLYDVDLAIILCEMNDFKEGLLYIYEKMKLYKEVISC
YMQAHDHEGLISCCKRLGDSGKGGDPTLWADLLKYFGELGEDCSKEVKEVLTYIERDDIL
PPIIVLQTLSKNPCLTLSVIKDYIARKLEQESKLIEEDRRSIEKYQEATLTMRKEIQDLR
TNARIFQLSKCTACTFTLDLPAVHFMCIHSFHQRCLGDNEKECPVCAPEYRSVLELKTSL
EQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGVISKTSNGPTGASS
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagtggcggaaattcgagttcttcgaggagaaattggcgggaaagtgcgcgatt
cccgaggaagtaagcggcaagatcgagtgctgctccagcggccgagggaaggtggtgatc
ggctgcgacgacggctccgtcagcttcctcgaccgcagcctccacttcagctacggcttc
caagctcactcctccgttctcttccttcagcagctcaagcaaaggaactttctggtgacg
attggagacgatgagcaaatctcgtcgcagcaatcgaggtgcttgaaggtgtttgatcta
gataggatacagccggaagggactagctcgacgagccccgattgcattggtatcttgagg
atttttactaaccaatttccggaagctaagattacgtcgtttttagtactagaggaagcg
cctccgatattgcttatagctattggattagataatggctgcatttactgcattaaaggg
gatattgcacgggagcgtatcacgcggttcaagctccaggtgaataatgtttctgacaag
agccagtgcgcgatcactggattgggattcagagtggatggtcaagctcttcagttgttt
gctgtgacaccgtcttctgtgagcttgttcatcttgcagaatcagccgtcaagggggcaa
acattggatcagattggaggcaatgttaacagtgttgccatgagtgatcgcggggagttg
ataattggtcgacctgaggctgtgtatttttatgaagttgatgggcgtggtccttgttgg
gcttttgaaggagaaaagaagtttttagggtggttccgtggatatcttctgtgcattatt
gaagatcaaagaagtggtaaccacactttcaacatatatgacctgaagaaccatttgatt
gcccacagccttgtggtgaaagaggtttcacacctgctctgtgaatggggtaacataata
cttataatggctgataagtccgctttgtgcatcggggagaaggatatggagagcaagtta
gatatgctttttaagaagaatctatatacagttgccatcaaccttgttcagagtcagcaa
gctgatgctgctgcaactgctgaagtgctgagaaagtatggtgatcatctatatagcaag
caagattatgatgaggcaatggcgcagtatatccataccattggtcaccttgagccgtct
tatgttatacaaaagtttctagatgcacaacgaatctacaaccttactaattacttggaa
aaattacacgagaaggggcttgcttctaaagatcataccactcttctattgaactgctac
accaaattgaaagatgttgacaagctaaacgtgttcatcaaaagtgaggatggttttggg
gaacataagtttgatgtcgagacggcaatacgggtctgccgcgctaccaactaccatgaa
catgctatgtatgtcgctaagaaggcagggaagcatgagtggtacttgaagatcttactt
gaagaccttggcagatatgaggaagccttgcaatatatttcaagccttgagccaagccaa
gcaggagtaacagtcaaagagtatggtaagattctcatagagcacaagcccgtggagaca
attgagatacttatgaggctgtgcaccgaggatggagaatcagccaagagaggaggtgct
aatggtgcatacttaactatgttaccatctcctgttgatttcctcaacatcttcatccat
catcttcagtcgcttatggttttccttgaaaagtataccaacaaggtcaaagactctcct
gctcaagtagaaatccataacacactcttggagttgtatttgtcaaatgacttgaacttc
ccattgatgtcacaagctagcaatggtggtgaaattagtgttaggtctactagaccagga
gcaggggcaatgtccaatgggaagtttgttgctgatggcaaagacttaactcaggaaatg
gaccgtatggaaaggcaagagaaagggctcaggctgcttaagagtgcatggccgtctgag
ctggaacatccgctatatgatgttgatcttgctataatcctctgtgaaatgaatgacttt
aaggaagggcttctctatatatatgagaagatgaaactctacaaagaggtgatttcttgc
tacatgcaagcccatgaccatgaaggtttgatttcatgctgcaaacgattaggggattca
ggtaagggtggggacccaactctttgggcagatctgttgaaatattttggtgaacttgga
gaagattgttccaaagaagtgaaggaagttttgacttatatagaaagggatgatatcttg
cctcctattattgttcttcaaacactgtccaaaaatccatgcctcacactctctgtcatt
aaggattacattgctcgaaagcttgaacaagaatcaaaactgattgaagaggaccgtcga
tctattgagaagtatcaggaagcaacattgacaatgagaaaagaaattcaggatctcagg
acaaatgcaaggatctttcagctcagcaagtgcaccgcatgtactttcacccttgatctc
cctgctgtacattttatgtgtatccactcattccatcagcgttgcctcggtgataatgag
aaagaatgccctgtatgtgctcctgaatacagatctgttctagaattgaaaacaagttta
gagcaaaactctaaagatcaggatcggttcttccagcaagttaaaagttcaaaggatggg
ttttctgtaatcgctgagtatttcgggaagggggtcattagcaaaaccagtaatggaccc
acaggtgcttcttcttga
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