Fragaria vesca (woodland strawberry): 101296298
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Entry
101296298 CDS
T02666
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101296298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101296298
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
101296298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_17
TPR_8
TPR_14
TPR_16
TPR_12
TPR_CcmH_CycH
TPR_20
TPR_15
TPR_Slam
BTAD
TPR_7
TPR_MalT
TPR_10
Motif
Other DBs
NCBI-GeneID:
101296298
NCBI-ProteinID:
XP_011464990
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All DBs
Position
LG5:complement(18673891..18682792)
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AA seq
1177 aa
AA seq
DB search
MPHSENYESELGRLHESIQTHPDDPSLRFELGALLWEEDDKEKSAEQFVVAAKLNPEIEK
GGAFRYLGLYYAALQSQSHAQRALKCLQKAVSINPDDSVAGEALCDFLDQQGKETLEVAV
CSEASQNSPRAFWAFQRLGYLQLHQNKCSEAVHSLQHAIRGYPTFPILWEALGLAYRRLG
RFTAALKSYGRAIELEGTRIFALIESGNIYLMLGSFKKGVEAFQQALEFSPKSVSAHYGL
SSGLLGLAKECINLGAFRWGATVLEEASKVAWKSTHLAGNMSSIWKLHGDIVLTYAKCYP
WMEEDHGLEFDVEAFNNSILSWKHTCYVAAKTARCSYQRALHLAPWQANAYSDIAVTSNY
INSLDNSSGHDSSSWQPSEKMALGALLLEGDNSEFWVGLGCLCNDNALKQHALIRGLQLN
VSLAVAWAILGKLYRKQGEKQFARQAFDCARSIDPSLALPWAGMSADSHSRESSADEAYE
SCLRAVQILPLAEFQIGLAKLALASGHLSSSQVFGAIKQAIQRAPDYPECHNLNGLVSEA
QSNYQSAAVSYRLARCAIINSSGSDTKSHMKDITVNLARALCKAGNALDALRECELLKKQ
GLLDAETSQIYAFSLWQLGQTDQAFSVARNLAESISTIEQASAAAALILFSRFLYNISGL
DSTINNILQMPKQRFQSTKFSLMVSAIHALDQRNRLKPVGLSIRNNLKTPEEITEMFFLL
ALGTLVKHGTEYHLGYQKGIDHVRKSLHMYPNSSLLRNLLGYLLLSSEEWNNTHMATRCC
SIGTDPINGGFKMSYEILGAGAVACYAVGNSNPKFSYPTCSYQCLNQPQTIQNLQKCLRQ
EPWNQNVRYLLVLNLVQKAREERFPRHLCIILRRLIIVALSDELYQKPGIAFRYMKFQLL
LCASEICLQDGYLIDCISHAKDASMITLPDAYLFFAHLLLCRAYASTGDVVNLNTEYIRC
LELRTEYNIGWLCLKFIESRYELKTGLDTLELSFKECSNEWKNSSNMWMALFNLVQGLMS
ISSHDISSAEGFLSQACSLAGPESTLLLCQGATCMELSRLGYDSQFLSLAVRSLTKAQEA
SLIPLPIVSALLAQAEGSLGSKEKWEKNLRLEWPTWPPEMRPAELFFQMHLLAKQSKAST
DTSSIEFCQSPQGWVLRAIHTNPSCMRYWKALQKLVE
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgccacactcggagaattacgaatccgagctcggacgcctacatgagtcgatacagacc
catccagacgatccctccctccgcttcgaactcggagcgttgctttgggaagaagatgac
aaggagaaatccgccgagcaattcgtggttgcggcgaagctaaaccctgagattgagaag
ggaggggcgtttagatacttagggctttattacgcagctctacaatcgcagtcccatgcc
cagagagctctaaagtgcttgcagaaagccgtgtcgatcaatccggatgactctgttgcc
ggggaagctttgtgtgattttctggaccagcaggggaaagagacattggaggtggcagtg
tgcagtgaggcatcacagaactcaccccgggctttttgggcttttcagaggctggggtac
ttgcagctccatcagaataaatgctcggaagctgtgcacagtcttcagcatgccattcgt
ggatatcctacctttccgattttgtgggaggctcttggccttgcctaccggcgacttggt
aggttcactgctgctctcaagtcctatggaagagctatcgaattggagggtacaagaatc
tttgctttgattgaaagcgggaacatctatttgatgcttggttcctttaaaaaaggagtt
gaggcatttcagcaagctttggaattctctcccaaaagtgtttccgcacactatgggctt
tcttcggggctgcttggtttggctaaggaatgtattaatctgggagcctttagatgggga
gctacagtcttagaggaggcatctaaagttgcctggaagagtactcatttagctggaaac
atgtcatctatttggaagctgcatggtgatatagtgcttacttatgcaaaatgttatccc
tggatggaggaggaccatggtttggaatttgatgttgaagctttcaataattctatcctc
tcctggaagcacacctgctacgtggctgcaaaaactgcccggtgctcttatcagcgagct
ttgcacttagccccatggcaagctaatgcatactccgacattgcagtaacttcaaattac
ataaactctttagataacagttctggacatgactcaagttcttggcagccatcagagaag
atggctttaggggcgttgttacttgagggtgacaattctgagttttgggtgggattagga
tgtttgtgtaatgacaatgcactgaagcaacatgctttaatcaggggactgcaattgaat
gtgtcactagctgttgcgtgggcaatcttaggaaagttatacagaaaacaaggtgagaag
caatttgcgagacaagcatttgactgtgccagaagtatagatccttctcttgctttgcca
tgggctggaatgtcggctgattctcattctagggagtcctcagcagatgaagcttatgag
agctgcttgcgagctgtgcaaatattgcctcttgctgaattccaaattggtcttgcgaag
cttgctcttgcttccgggcatctttcatcttcacaggtgtttggagccatcaagcaggcc
atccaacgtgcacctgactatcctgaatgccataatttaaatgggctagtctctgaggca
cagtccaattatcagtctgctgctgtctcttataggctagcacgctgtgcaatcatcaat
tcatcaggcagtgatacaaaatctcacatgaaagatataacagtcaatttggcccgggca
ctttgtaaggcagggaatgctcttgatgctttgcgggaatgcgaacttttgaagaaacaa
gggttacttgatgcggaaacctcccaaatatatgctttctccttatggcaacttggtcag
actgatcaagcttttagtgtggcaagaaatcttgctgagagcatctctacaattgagcaa
gcatctgcagctgctgctcttattctcttctctagattcctatataatatatctggactg
gattcaactatcaataacattctccagatgccaaagcaacggtttcagagcactaagttc
agtttgatggtatctgctattcatgctctggatcaaagaaatcgacttaagcccgttggt
ttaagcatccgtaacaatctgaaaacgcctgaagagataacggaaatgttctttttatta
gctcttggtacactagtgaagcatggaacagaataccatcttggatatcaaaaaggaatt
gatcacgttaggaagtctcttcacatgtaccctaacagtagtttgttaaggaatcttctt
ggttatctattgctgtcaagtgaagaatggaataatacccacatggcaactaggtgttgc
agcataggcactgatccaattaatggcggttttaaaatgtcatatgaaatacttggtgct
ggagcagtcgcttgctatgctgtaggcaatagcaatcctaagttctcttacccaacatgc
tcataccagtgcctgaatcaacctcaaaccatacaaaacctgcagaaatgtttacgccaa
gaaccatggaaccagaatgtaaggtatttgcttgttctcaatctggtgcagaaggcacgt
gaagagagatttcctcgtcatctttgtattatactcaggcggctgataattgtagccctt
tctgatgaactttatcaaaagccaggcattgcttttagatatatgaaattccagcttcta
ctctgcgcatcagagatctgtttgcaagatggttatctgattgactgcatcagccatgcc
aaagatgcttctatgattacgcttcctgatgcctatcttttctttgcacacttgctttta
tgtcgtgcctatgcctcaacaggtgatgtagtaaaccttaatacagagtatataagatgc
ttggagctcaggacagaatataatattggttggttatgtctgaagttcattgaatctcgt
tatgaattgaaaactggtttggatactttggagttgagcttcaaagagtgctcaaatgag
tggaagaattcatcaaatatgtggatggctctattcaatctggttcaaggtctgatgtct
atatcaagccatgatatctcatccgcagaagggtttctttcacaagcttgttctttagct
ggtcctgagagcactctcctgctttgtcagggtgccacctgtatggagctttcacgcctg
ggttatgattctcaattcttatcacttgctgtaaggagtctcactaaagctcaagaagct
tctctcattcccttaccgattgtctcagcattgctagctcaagcagaaggaagccttggc
tcaaaagagaagtgggagaagaaccttcgtcttgagtggccaacttggccgccagaaatg
aggcctgcggaactgttcttccagatgcacttacttgcaaaacagtcgaaagctagtaca
gacacttccagtattgagttctgtcagagtccacagggatgggttcttcgagcaatccat
acaaacccttcttgtatgagatattggaaagctttgcagaagcttgtggaatga
DBGET
integrated database retrieval system
