Fragaria vesca (woodland strawberry): 101296686
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Entry
101296686 CDS
T02666
Name
(RefSeq) ATP-dependent RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101296686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101296686
03012 Translation factors [BR:
fve03012
]
101296686
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101296686
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101296686
Translation factors [BR:
fve03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101296686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
AAA_19
Cas3-like_C_2
ATPase
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
101296686
NCBI-ProteinID:
XP_004303378
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All DBs
Position
LG6:20156570..20165241
Genome browser
AA seq
1037 aa
AA seq
DB search
MCCLLLTLRTTTARLLLPTHFFAAPRLLTSRSAFSALAMSNRPNFHGGRRGGGPNSRGGG
RRGGGGGGRGGGEQRWWDPVWRAERLRQQAAEMEVLDSSEYWGKMEQFKSGAEQEMIIRR
NFSRHDQQTLYDMAYELGLHFHAYNKGKALVVSKVPLPDYRADLDDVHGSTQKEIRMSTE
TAERVGSLLQSSQGQGSKQAFGNVALVASGSGQGNKQTLVVENTNKPSSRLEAETVKEKE
KLSLQLKELQEKMKVSNSLKAMLAFREKLPAFNVKSEFLRAVSENQVLVVSGETGCGKTT
QLPQFILEDEISRLHGADCNIICTQPRRISAVSVAARISSERGENLGETVGYQIRLESKR
SAQTRLLFCTTGVLLRQLVQDPQLTGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR
LILMSATINADLFSKYFGNAPTIHIPGLTFPVAELFLEDVLEKTRYTIKSESDKMERGNS
RRKRQQNSKKDPLMELFEGVDIDLRYKSYSTSTRKSLEAWSGSQLDLGLVEATVEHICRY
ERDGAVLVFLTGWDDISKLLDKIKGNRFLGDPEKFMVLPLHGSMPTVNQREIFDRPPANK
RKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAG
RVQPGVCYRLYPKMIHDAMLQYQLPEILRTPLQELCLHIKSLQLGAVGSFLAKALQPPDS
LAVQNAIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSVFQCLNPALTIAAA
LAHRDPFILPIDRKEEADAAKRSFAGDSFSDHIAVVKAFEGWKDAKRNGSGKSFCWDNFL
SPVTLQMMEDMRFQFVDLLSNIGFVDKSKGASAYNQYSHDLEMVSAILCAGLYPNVVQCK
RRGKRTAFYTKEVGKVDIHPGSVNAGVHLFPLPYMVYSEKVKTASIYIRDSTIISDYSLL
LFGGNLIPTKTGEGIEMLGGYLHFSASKSVLELIRKLRRELDKLLNRKIDNPALDVSIEG
KGVVSAVVELLHSPNVH
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgtgttgtttgctcttaactctgcgcacaaccaccgcccgcttactacttcccactcac
ttcttcgccgctccacgactcctcacatcccgctccgccttctcagctctcgccatgtcc
aaccgccccaacttccacggcggccgcaggggtgggggccctaactcccgcggcggcggc
cgtcgtggaggaggcggtggcggtcgcggaggtggtgagcagcgctggtgggacccggtc
tggcgagctgagcgactgaggcaacaagccgcagagatggaagtacttgattcgagtgag
tattgggggaagatggagcagtttaaaagcggagcggagcaggagatgataatcaggcgc
aattttagtcggcatgatcagcaaacgctatatgatatggcctatgagctagggcttcac
ttccatgcgtataataaggggaaggctcttgtggtcagtaaggttccgttgccggattac
cgggcagaccttgatgatgttcatggttccacacaaaaagagattcggatgtctacagag
actgcagagagagttgggagtcttttgcagagctcgcaggggcagggaagcaagcaagct
tttggtaatgtggctttagtggcgtctgggtctggccagggaaacaaacaaacacttgtt
gttgaaaatacaaacaaacccagctccaggttggaggctgagactgttaaggagaaagag
aaacttagccttcaactcaaagagttgcaagaaaagatgaaggtgagtaatagtctgaaa
gcaatgctggcgttccgagaaaaacttcctgcgttcaatgtgaagtctgagttcctgaga
gctgtttctgaaaatcaggtgttggtagtctcgggtgagacaggttgtggcaaaacaaca
caacttcctcagtttattctagaagatgagatttcacgtctgcatggtgctgactgcaac
ataatatgcactcaacctcgtcgtatatctgctgtgtctgttgctgctcgtatatcctct
gaaaggggagagaatcttggtgaaactgttggttatcagattcgactggaatcaaagcgc
tctgctcaaacaagattgctattttgcaccactggagtattgcttcgtcagttggttcaa
gacccacagttaactggcgtgagccatttgttggttgatgaaatccatgaaagaggcatg
aatgaggactttttgttaataattctgcgtgaccttcttcctcgacgtccagatctgcga
cttattctaatgagtgctaccattaatgctgatttgttttccaaatactttggaaatgcc
ccaacaatacatataccgggattaacgttccctgtggcagagctatttctagaagatgtt
ttggagaaaactcgatacacaattaagtcagagtctgacaagatggagaggggaaattcc
aggagaaagagacagcaaaactccaagaaggatcccttaatggaactatttgagggtgtt
gatattgatcttcgttacaaaagttacagcacatctacaagaaagtctctagaagcttgg
tctggttcacaacttgatttgggtctggtggaggcaactgtggaacatatatgtcgctat
gagagagatggagcagttcttgtgttccttacgggctgggatgatatatcaaagttactt
gacaaaattaagggaaatagattccttggagatcctgagaagttcatggttcttcccctg
catggatcaatgcctactgtcaatcaacgagaaatatttgaccgtcctcccgctaacaaa
agaaaaatagtgctagcaaccaacattgcagagagcagtattaccatagatgatgtcgtg
tatgtcatagactgtggaaaggcaaaggaaaccagttacgatgctttaaacaagttggct
tgtctattaccatcatggatttcaaaggcttcagcacatcagagacgaggccgtgctggt
cgtgtccaacctggagtttgttacagactatatccaaaaatgattcatgatgcaatgctt
caatatcagttacctgaaattctccggacacctttgcaagagttatgcctccacataaaa
agtttgcagcttggagctgttggatcatttttggcaaaggcacttcaaccaccagattct
cttgcagtgcaaaatgccattgaacttctcaaaactattggagccttagatgatatggaa
gagctgactccacttggccgccatctttgcactcttccattggatccaaacattggaaag
atgcttctgatgggttctgtctttcagtgcctcaatcctgccttaacaattgctgctgcc
ctcgctcatcgagacccatttatcctaccaatagataggaaagaggaagctgatgctgca
aaaagatcctttgctggtgattctttcagtgatcacatagcagttgttaaagcttttgaa
ggatggaaagatgcaaaacgtaatggatcaggaaaatcattctgttgggataacttttta
tcaccagtaaccttgcagatgatggaggatatgaggtttcagtttgtagatctattatca
aacattggctttgtcgacaaatccaagggtgctagtgcgtacaaccaatacagccatgac
ttggagatggtgtctgcaattctttgtgctgggctttacccaaatgttgtgcagtgtaaa
agaagaggaaagcggacagcattctacaccaaagaagtcggtaaagttgatattcatcct
ggatcagtcaatgctggggttcatttattccctctgccttacatggtttatagtgaaaaa
gtgaagacagccagcatttacatcagagactctacaattatatcagattattctttgctt
ttatttggtggtaatctcatcccaaccaaaacgggagagggcattgagatgcttggaggt
taccttcatttctctgcatcaaagagtgttttggagttgatacggaaattacgccgtgaa
cttgacaagctgttaaacaggaagattgacaacccagcattggatgtctctattgaggga
aagggagtggtatctgcagtcgttgagctattgcatagcccaaatgtacactaa
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