Fragaria vesca (woodland strawberry): 101296848
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Entry
101296848 CDS
T02666
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101296848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101296848
03019 Messenger RNA biogenesis [BR:
fve03019
]
101296848
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101296848
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101296848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
101296848
NCBI-ProteinID:
XP_004295608
LinkDB
All DBs
Position
LG3:complement(8020649..8025838)
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AA seq
689 aa
AA seq
DB search
MEDPDGVLNFDFEGGLDSAAVSAPTHTGLASSAPIQSDSFASQPKNQAAPAPQPDPNVNP
SGRKSFRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPVCRFFRMYGECREQDCVYKHTNE
DIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLNSYNYNNSNKFSQPRNG
GFPQQHDRSQPAQVTNSFNQVVVRPSAAESANVQQPQQFQQTQQPVAQTQAQSVPNGLAS
QANRAALPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSAENVILIF
SVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRN
PYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISIAAESKREEEKAKGVNPEN
GGENPDIVPFEDNEEEEEEESDDEEDYQVPGGAIENRGRGRVMWPPHMPLGGRGGRPMPG
MQGFPGMMGPDAMPYGPVTPDGFVMPNPFGMGGPRGFNPYGPRFSGDFGGPNPGMMFRGR
PPQPGGMFPPGPYGMMMGPGRGPFMGGMGVGGNNPARGGRPGGMPPMFPPHPPSQNNNRL
QKRDPRGSGNDRNERYSAGSGHGKEMQAGGPDDENHYQHSSKSYQEDYGAGNNGRNDDSE
SEDEAPRRSRHGEGKKKRRDSEGDATSEH
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccccgacggagtcctcaacttcgacttcgagggcggcctcgactccgccgcc
gtctccgcgcccacccacaccggcctggcctccagcgccccgatccagtccgactcgttc
gcctcccagcccaaaaaccaggccgccccggcgccgcagcccgacccaaatgtcaacccg
tcggggcggaagagcttccggcaaacggtgtgtcgtcactggctccggagcctctgtatg
aaaggcgaggcctgcgggttccttcatcaatacgacaagtcgcggatgccggtgtgccgg
ttcttccgtatgtacggcgagtgtagggagcaggattgcgtgtataagcataccaacgag
gacatcaaggagtgtaatatgtacaagttaggtttttgtccaaatggtcctgattgccgg
tatagacatgcaaagcttcctggacctccaccccctgtggaagaagtccttcagaagatc
cagcatttgaattcgtacaattacaacaactcaaataagttctcccaaccacggaatggt
ggttttccccaacaacatgatagatctcagcccgcacaagtcaccaattcattcaatcaa
gtggttgtaagaccttcagcagcagagtctgctaatgtccagcagccacagcaatttcag
caaacccaacaaccggttgcccagactcaggcacaaagtgttcccaatggcctggctagt
caggcaaatagagccgcactgcccttgcctcaaggaatatctaggtattttattgttaaa
agttgcaaccgtgaaaatttggaattatccgtacaacaaggagtttgggcaactcaaagg
agcaatgaatccaaactcaatgaagctttcgactctgcagaaaatgtcatattaattttc
tcagtcaaccggactcgacattttcagggttgtgcaaagatgatgtccagaattggtggg
tctgttagtggagggaactggaaatatgcacatggaactgcacattatggccgtaatttc
tctgtcaaatggttaaagctatgtgaactttccttccacaaaactcgtcacttgaggaac
ccatacaatgagaacttaccagtgaagataagtagagattgtcaagagctagagccctcc
atcggtgagcagttggcatccttgctttatcttgaaccagatagtgaactaatggcaatc
tccattgcagcagagtcaaaacgagaagaagaaaaagcaaagggagtcaatccagagaat
ggtggtgagaacccagacattgtcccatttgaggacaatgaagaagaggaagaggaagaa
agtgacgacgaggaagactatcaagttcctggtggagcaattgagaacagaggaaggggt
agagtcatgtggccccctcatatgccactaggaggaaggggtggcagacctatgcctggg
atgcaggggttccctggaatgatgggtcctgatgcaatgccgtatggaccagttacacct
gatggatttgttatgcccaatccttttggtatgggcggccctcggggtttcaatccatat
ggtcctaggttttccggtgattttggtgggcccaatcctggcatgatgtttcgtgggcgg
cctccacaacctggtggtatgtttccacctggtccttatgggatgatgatgggtcctgga
cgtggaccatttatgggagggatgggggttggaggtaataatccagcccgaggtggtcgt
ccaggtggtatgccaccaatgtttcccccacacccaccatctcaaaacaataaccggttg
cagaagagagatccaaggggatcgggcaatgatcggaatgagaggtatagtgcaggatca
ggtcatggcaaagaaatgcaggctggtggaccagatgatgagaaccattatcagcattca
tcaaaatcgtaccaggaagattatggtgctgggaacaatggtaggaatgatgacagtgaa
agtgaagacgaagcaccgaggcggtcaaggcatggagagggaaagaagaaacggcgagac
tcggaaggagatgctacctctgagcactag
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