Fragaria vesca (woodland strawberry): 101296930
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Entry
101296930 CDS
T02666
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101296930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101296930
03019 Messenger RNA biogenesis [BR:
fve03019
]
101296930
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
101296930
RNA polymerase I system
101296930
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
101296930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW6_SPT51-2
KOW4_SPT5
KOW
KOW2_Spt5
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
KOW6_SPT5
ProQ_C
Motif
Other DBs
NCBI-GeneID:
101296930
NCBI-ProteinID:
XP_004292548
LinkDB
All DBs
Position
LG2:complement(15193179..15201065)
Genome browser
AA seq
1041 aa
AA seq
DB search
MPRHRDEDDDDMEPEEDEYDPDQGLDEEEEEEEEEEEEERGRRSSQKRRRSSFIDDVAEE
DDEEEEEDDDDEEYGAYRGGGGRNKKKKKKPSGADFLDLEAEVDSDEEEEEEEGDDDFIE
DGADIPEEGGRRRMHRPPLLDDQPEDVEDLERRIQERYARQHHTEYAEETTDVDQQALLP
SVLDPKLWMVKCAIGKEREVAACLMQKYIDKPELNIRSAIALDHLKNYIYVEAEKEAHVR
EACKGMRNIFLAKISLVPIREMTDVLSVESKAIEISRDTWVRMKIGIYKGDLAKVVDVDN
VRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNIDEARELHIRVERKRDPMT
GDYFENIEKMMFKEGFLYKIVSMKSISTQNIHPTFDELEKFRKPGENGEGDIASLSTLFS
NRKKGHFVKGDAVIIIKGDLKNLKGRVEKVEDGTVHIRPEMKDLPKTLAVNEKDLCKYFE
AGNHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHLRVFADDVVESSEVTSGITKIGD
YELHDLVLLDNNSFGVIIRVETEACQVLKGVPERPEVALIKLREIKCKIDKKLSVQDCFK
NTISVKDVVRVVEGPSKGKQGPVEHIYRGVLFIYDRHHIEHAGFICVKSHSCRVVGGSRA
NGDRNGDSYSRFDHLRAPPAIPPSPRRFTRGGPPNNFGGRNRGGRGHDGLVGTTVKIRQG
AYKGYRGRVVEVKGTSVRVELESQMKVVTVDRNCISDNVAITTPYRDTSSYGMGSQTPIH
PSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYAPMSPARDSWEDGNPGSWGTSPQ
YQPGSPPSRTYEAPTPGSGWASTPGGNYSEAGTPRDSTGYANAPSPYLPSTPGGQPMTPN
SASYLPGTPGGQPMTPGTGLDMMSPVIGGDNEGPWFMPDILVNVRHSGEETTGIVREVLL
DGSCRVALGSGGNGETVTVHPNEMEVVAPRKNDKIKIMGGSLRGATGKLIGVDGTDGIVK
VDDTLDVKILDLAILSKLAQS
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtcacagagacgaagacgatgacgacatggagccggaggaggacgaatatgac
cccgaccaaggcctagacgaggaggaggaggaggaagaggaggaggaggaggaggaacga
ggacggaggtccagccagaagcggaggagatcgagcttcattgacgacgtggcggaggag
gacgacgaggaggaagaggaagacgacgacgacgaggaatacggcgcctatcgcggtggc
ggtgggaggaataagaagaagaagaagaagccctccggtgcggactttcttgatcttgaa
gcagaagtcgattcggacgaggaagaagaggaggaagagggcgacgacgactttattgaa
gatggagctgatatacccgaggagggaggtcgtagaaggatgcatcgtcccccattgttg
gatgaccagccagaagatgttgaggatctggaaagaagaattcaggaaaggtatgcaagg
caacatcatacagaatacgccgaggagaccactgatgtggatcagcaagctcttttacct
tctgttttggacccaaagctgtggatggtgaaatgtgcgatcggtaaagagcgagaggtt
gctgcttgcttaatgcaaaagtatattgacaaacctgaactgaacatcaggtctgctatt
gctcttgaccacctgaagaactatatatacgttgaagccgaaaaagaagcccatgtgagg
gaggcttgcaaaggaatgcgcaatatatttttggcgaaaatatcgcttgttcctatcaga
gaaatgactgatgttctttctgttgaaagcaaggcaattgaaatttcgagggatacttgg
gtcagaatgaagattgggatatataaaggggaccttgccaaggttgtcgatgtggataat
gtacgacaaagagttacagtaaaattaattccaagaattgatttacaagctcttgcaaat
aaactggagggcagagaagtggtgaaaaagaaagcgtttgttcctccgccacgttttatg
aatattgatgaagctagggaactgcatattcgtgtggagcgtaaacgagatccaatgacg
ggtgactactttgaaaacattgagaaaatgatgtttaaagagggcttcttgtataaaata
gtatcaatgaaatcaattagtactcaaaacatacatcccacttttgatgaactggaaaag
ttccggaaacctggggagaatggggaaggagatatagccagtctgtcaactttattttca
aacagaaagaaaggacactttgtgaagggtgatgcagtcatcataatcaagggagaccta
aagaacttgaaagggcgggttgagaaagttgaggatgggactgtgcatatcagacctgaa
atgaaggacctccctaaaactcttgccgtaaatgaaaaagatctttgcaagtactttgaa
gctgggaatcatgtgaaggttgtatctggtactcaagaaggtgcaactggcatggttgtc
aaggttgagcagcatgtgctcatcattttatctgatacaactaaggaacatctccgtgta
tttgctgatgatgttgtggagagttctgaagtgacatctgggatcaccaaaattggggac
tatgagcttcatgatcttgtgctactggataataatagctttggtgtaattatacgtgtt
gaaactgaagcatgtcaggtccttaagggagttcctgagagacctgaggttgcccttatt
aaattaagagagatcaaatgcaagattgacaaaaagcttagtgtgcaagattgttttaag
aacacaatatctgtgaaagatgttgtaagggtcgtcgaaggtccttccaaggggaaacaa
ggtcccgtggaacacatatacagaggagtcttattcatttatgatcgccatcacatagag
catgcaggctttatctgtgttaagtcacattcttgtcgtgttgtaggaggatcacgtgcc
aatggagatagaaatggtgactcctactctagatttgatcatcttcgagctcctcctgcg
attcccccgtccccaaggaggtttactagaggaggccctcccaacaattttgggggaaga
aatagaggtggaagagggcatgatggattggttgggactacagtaaagattcgccagggt
gcctataagggctaccgtgggcgcgttgttgaggtaaagggaactagtgtacgggtggaa
ctcgagtcccaaatgaaagttgttacagttgaccggaattgtatttctgacaacgtggct
attacaacaccttatcgtgatacgtctagctatggtatgggaagtcagaccccgattcat
ccttctcgaactccgctacatccttatatgactccaatgagggatgctggagcaacgccc
attcatgatggaatgaggactccgatgcgtgatcgagcatggaatccgtatgcacctatg
agcccagcaagggatagctgggaggatggaaaccctggttcttggggcactagtccacag
tatcagccaggaagtcctccttcacggacatatgaagctccaactcctggttcaggttgg
gccagcactcctggtggaaactatagtgaagctggaacaccaagggacagtactggttat
gcaaatgctcctagcccgtacttgccgtcgactcctggtgggcagcctatgacaccaaac
tcagcatcctatcttcctggaactccgggagggcagccaatgacaccagggactggtctg
gatatgatgtctcctgttataggtggggacaacgaaggaccatggttcatgccagatata
ttggtcaatgtacgccattctggagaggaaactactgggattgtcagagaagtgctcctg
gatggctcatgtagggtagctcttggatcgggtggcaatggtgaaactgtaactgtacat
ccaaatgaaatggaggtagtcgcaccaaggaagaatgataagatcaaaatcatgggtggc
tcattgcgtggtgccaccggcaagctgataggagttgatggcacggatggaattgtcaag
gttgatgacactcttgatgttaaaatattagacttagctattttgtcaaaactggctcaa
tcataa
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