Fragaria vesca (woodland strawberry): 101297031
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Entry
101297031 CDS
T02666
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101297031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101297031
03036 Chromosome and associated proteins [BR:
fve03036
]
101297031
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
101297031
Coactivators
SAGA/TFTC/STAGA complex
101297031
Chromosome and associated proteins [BR:
fve03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
101297031
STAGA complex
101297031
TFTC complex
101297031
SAGA complex
101297031
SLIK complex
101297031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_DCAF12
WD40_like
PALB2_WD40
Cytochrom_D1
Mon2_C
Motif
Other DBs
NCBI-GeneID:
101297031
NCBI-ProteinID:
XP_004291953
LinkDB
All DBs
Position
LG2:complement(33071402..33076996)
Genome browser
AA seq
666 aa
AA seq
DB search
MEEEKIQKFIQDYFKNRGLKLPEELQQSSTNTVSSPVSQFDPDVVRQILAFSQFQDGPAR
YQDEYARLRSWTYTSLDLYRHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNSFREDHEM
MHLRDLQKLEGVLSPSHLEEMEFAHSLRQSKVNIKICQYSYELLLQFLHKSQSTTMLGII
NEHINFQVSPGQPSSITDDAEAVTLMGGSQESANQINQKEIHWGLLEDSLEERLEKVGGM
ALDSERAEGETKEGEGDENKKKSIEGGKQGASIKKQKKDKAVSATMKSARPEATPVPTAP
RVKPELTLPVIPTEVEQSILEDLRNRVQLSSAALPSVSFYTFINTHNGLNCSSISHDGSL
VAGGFSDSSLKVWDMAKIGQQSVGSDLQGENGTASSEQVAGSNGGKRPYTLFQGHSGPVY
SATFNPLGDFILSSSADSTIRLWSTNLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDR
TARIWSMDRIQPLRIMAGHLSDVDCVQWHSNCNYIATGSSDKTVRLWDVQSGECVRIFIG
HRSMILSLAMSPDGRYMASGDEDGSIMMWDLSTGRCVTPLMGHTSCVWTLAFSGEGSLLA
SGSADCTVKLWDITASTKLPKAEEKSGSASRLRSLKTLPTKSTPVYSLRFSRRNLLFAAG
VLSKSV
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggagaagattcagaaattcattcaggactatttcaagaatagagggctcaag
ttgccagaagaacttcagcaatcatccaccaacactgtttcctcccccgtctctcaattc
gaccccgacgtcgtcaggcaaatcctcgccttctcccaatttcaggatggtcctgctcgt
taccaagatgaatatgccaggttgaggtcatggacttatacttctctagatttgtacagg
catgagttgctccgtgttctttacccagtatttattcattgtttcatggaccttgttgct
aagggtcatattcaagaagctcggacatttttcaatagcttccgcgaagaccatgaaatg
atgcacctacgagatctacagaagttggaaggagttctttctccctctcatttggaggag
atggaatttgctcattctcttaggcagagcaaagtgaacatcaagatatgtcagtactcc
tatgagcttctgctgcagttcttgcacaagtcacagtccaccacaatgcttgggattatc
aatgagcatattaatttccaagtttctcctggacaacccagctcaattactgatgatgcg
gaggctgtaacacttatgggaggcagccaggagtcggctaatcaaataaaccagaaggaa
attcattgggggttgcttgaagattccttggaagaacgcttggaaaaggttggcggaatg
gctttagattctgaaagagcagaaggggaaaccaaagaaggggagggtgatgaaaataag
aaaaaatcaattgaaggtggtaaacagggtgcttctatcaaaaagcaaaaaaaggacaag
gctgttagtgcaacaatgaaaagtgcacgccctgaggcaacccctgtacctactgcacca
cgagtcaaaccagaacttactttgccagtaattccaacagaagttgaacagtctattctt
gaggacttgagaaaccgtgtacagttgagtagtgctgcgctgccatctgtcagcttttat
acatttatcaacacacacaatggtttgaactgttcatctatttcccatgatggatccctg
gttgctggtggattttctgactcgtcgctgaaggtctgggatatggcaaagattgggcaa
cagtctgttggttcagatctgcagggtgaaaatggcacggcttcaagtgaacaagttgct
ggctcaaatggcgggaaaagaccatacacattgtttcagggtcattcagggccagtttat
tctgccactttcaatcctcttggtgattttatactttcctcttcagcagactcaactatt
cggttgtggagcacaaaccttaatgctaatcttgtttgctacaagggtcataattaccct
gtatgggatgttcagtttagccctgtaggtcattattttgccagtgcttcacatgataga
acagcaagaatttggtctatggatagaatacagcctttgagaataatggcggggcactta
tctgatgttgattgtgtacaatggcattccaactgcaactacattgcaactggttctagt
gacaaaacagttagattatgggatgtacagagtggagagtgtgtccgaatattcattggc
cacaggagtatgattttatctctcgcaatgtcacctgatggtcggtatatggcttcgggt
gatgaagacggctcaatcatgatgtgggatctttcaactggccgctgcgttacacctttg
atgggtcatacatcatgcgtatggacactggctttcagtggtgaaggttcactccttgct
tctggctctgctgattgcacggtaaaattatgggacataactgcaagtacaaagttgcca
aaagctgaagaaaaaagtggaagtgctagcagactgaggtcattgaagactttaccaacc
aagagtacgcctgtctactccttacggttttctcgaaggaatcttctgtttgcagccggg
gtcctttcaaaaagtgtatga
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