Fragaria vesca (woodland strawberry): 101297473
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Entry
101297473 CDS
T02666
Name
(RefSeq) ATP-dependent RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101297473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101297473
03012 Translation factors [BR:
fve03012
]
101297473
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101297473
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101297473
Translation factors [BR:
fve03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101297473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
OB_NTP_bind
Ank_2
R3H
HA2_N
Ank_5
nSTAND3
AAA_22
Ank
ATPase
Ank_3
AAA_16
AAA_19
AAA_7
AAA_23
PhoH
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
101297473
NCBI-ProteinID:
XP_004305853
LinkDB
All DBs
Position
LG6:complement(27326096..27332262)
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AA seq
1222 aa
AA seq
DB search
MVRKRNKGGPARSPVISEEARTRLDDALQKFIDSKELQYIFGTELTTNERAYVHGQCLKL
DLKSKSSGSGKTRRIRVFRRFRGEENVNAADIIPRVEFSEGSAEVLGDLFMRYPPGDGEG
AEERMGEGCQNIQKALRKKDPLFCRTSMGRDEVVKKAEAHAKMKNSKITEDRLKLPMASY
KDVVTSAVDSNQVVLISGETGCGKTTQVPQYLLDHMWGKGKPCKIVCTQPRRISAISVAE
RISYERGQSVGGDIGYKIRLESKGGKHSSVVFCTNGILLRILISSGGGRSKTDASNKETK
RQDLSDITHIIMDEIHERDRHSDFMLAILRDMLPSHPHLHLILMSATVDAERFSQYFGGC
PVIRVPGFTYPVKTFYLEDVLSILRSVENNHLENPALDTSTSAHDLSEEDKLALDEAISL
AWSDDDFDPLLELVSTKGTYKVFDYQHSVTGLTPLMVFAGKGRLDYVCMLLSFGADCQLR
AKDGTTALELAEQLDQLESARMLKEHMESALTNSMEQQNLLEKYLKYFNPENIDFILIEQ
LLTKICSDSKDGAILVFLPGWDDINKTRDRLLMNPYFRDPSKCVIIPLHSSVPAAEQKKV
FSRPPSGCRKIVLSTNIAETAVTIDDVVYVIDTGRMKEKNYDPFNNVSTLQSSWVSKASA
KQRQGRAGRCQPGICYHLYSKLRAATLSDFQVPEIRRMPIEELCLQVKLLDPDCKIDEFL
NKTLDPPQSETIQNAISVLQDIGALSVEESLTELGEKLGSLPVHPLTSKMLFFAILMNCL
DPALTLACAADYKDPFILPMESEEKEKALDAKAELCSLYGGHSDQLALIAAFDCWKIAQE
QGRESRFCARYFVSGSTMHMLSGMRNQLQTELIRLGFIPEDVSRCSLNAHNPGIINAVLV
AGLYPMLGRVLSTTKGGKRKGTFIEIPNGSNVRLHTRSTISKLEFNPRGGPPLVVYDEIT
RGDGGSSIRNCSVVGPLPVLLLAAEIAVAPANDDEGSDVDDNDHGSDEDAMEIDCKSGGQ
HEEKIMSLPDKSVMIIVDGWLYFQSKALDVAQIYCLRERLSAAILFKVTHAKEVLPPDLG
ESIYAIACVLSYDGQSGIPLQKSNQVPVSNGTVKLSDYPPSVPSPRVSRNRIRPSPSQVP
VGKVNVKVKKKKAAELKQPLVQSAPRKPLPQATDAKLSNDPSIQSVPPPPGSNTTLPPPS
QVPVPVGPVAGNKRKKRRNQAG
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggtaagaaagaggaataaagggggaccagcccggtcccctgtgatttcagaagaagcc
aggacgcgattagatgacgccctccaaaagttcatcgattccaaagaactacaatacata
tttgggaccgagctcaccaccaatgaacgggcctacgtgcacggacagtgcctgaaattg
gatttgaaatccaagagcagtgggtccggtaaaactcggaggattcgggttttcaggcgg
tttaggggggaggaaaacgtcaatgctgcggacataatcccccgggttgagttttcggaa
ggctcagcagaagttttgggggatttgttcatgcgttaccctcccggagatggagaggga
gccgaagaaaggatgggtgaaggttgtcaaaatattcagaaagcccttcggaagaaagac
cccttgttctgcagaacttcaatgggccgggatgaagttgtaaagaaagcggaagcgcat
gctaagatgaaaaactccaagattacagaggacaggcttaagctaccaatggcatcctat
aaggatgtggtaacttccgcagttgattctaaccaggttgttcttatatctggtgaaact
gggtgcggaaagaccacacaggtcccgcaatatcttttggaccatatgtggggtaagggt
aagccatgtaaaatagtgtgcactcaaccgaggcgtatctcagcaatatcagttgctgag
agaatctcgtatgaaagagggcagagtgttggcggggatattggatacaagatacggttg
gaaagcaaaggtgggaagcactcatctgttgtgttctgcacaaatgggattctattgagg
attctaatttccagtggcggtggtaggtcaaaaacagatgcatcgaataaagaaaccaaa
cgacaggatctctctgacataactcacattattatggacgaaattcatgaaagggatcgc
cactctgatttcatgctggctattctcagagacatgcttccttcacatcctcatctgcat
ctgattttgatgagtgcaactgttgatgcggaacgcttttcacaatattttggtggctgc
ccagttatccgtgtcccagggttcacttatcctgtcaaaactttctatttggaggatgta
ttgtctatcttgagatctgttgaaaataatcacttagaaaaccctgcattagatacctca
acctcagcccatgatttgtcagaggaagataagcttgctttagatgaagcaattagtttg
gcttggtcagatgatgattttgatccacttctagaattggtttctactaaaggaacctat
aaagtctttgattaccagcattctgtaactggacttacaccattaatggtgtttgctgga
aagggtagattagattatgtttgcatgctgctatcctttggtgcagactgccaattacgg
gccaaggatggaaccactgcattagagttggctgagcagctagaccaattagaatctgct
cgaatgttgaaagagcatatggaaagtgctcttactaactccatggaacaacaaaatttg
ctcgagaaatatctcaaatattttaatcccgagaatattgacttcattcttatcgagcaa
ttgttaacaaaaatttgtagtgattcaaaagatggagctattcttgtctttcttccaggg
tgggatgacataaataaaacgcgggacagattactcatgaatccatatttcagagatcct
tccaagtgtgtgattatccctctacattcaagtgttcccgctgctgaacaaaagaaggtc
ttcagccgtccacctagtggttgccgaaaaattgttctttcaaccaatattgctgaaact
gcagtcaccattgatgatgtggtttatgttatagacactggtcggatgaaagaaaaaaat
tatgatccttttaataatgtttcaactcttcaatcttcttgggtgtcgaaagcgagtgcc
aagcagcgacaggggcgtgcgggccgttgtcaacctggaatctgttatcatctttactct
aaacttcgagcagctacactgtcagattttcaggtgcctgagattaggagaatgccaatt
gaggaactttgccttcaggtgaagttgcttgatccggattgcaagatagacgagttccta
aacaagacactggatcctcctcaatctgagaccatacagaatgcgatttctgttcttcag
gatattggggctttgtcggtggaggaaagccttacagaacttggggaaaagctaggttct
ttacctgttcatccattgacgagcaagatgctattctttgctatactgatgaactgtctc
gacccagctttaaccctggcctgtgctgctgactacaaggatccattcattcttcctatg
gagtctgaggaaaaggagaaagctcttgatgctaaggctgaactttgttcgttgtacggt
ggccatagtgatcagctggcactcatagcagcatttgactgctggaagattgcacaagaa
cagggtagggagagtcgcttctgtgccagatactttgtctctggaagtaccatgcatatg
ctatctggtatgcggaatcaactccaaacggagctaattaggctggggtttattcctgag
gatgtgtcaagatgtagcttgaatgcacacaatccaggtataatcaacgctgtcctggtg
gctggtttgtatcccatgttgggaagagtgctttctactactaagggtggaaaaagaaaa
ggaacctttatagagattcctaatggtagtaatgttcgtttgcacactcggtctactatt
tcgaaattagagttcaatccacgtggtggtcctccattggttgtgtatgatgagataacc
cgtggggatgggggttcgagcatacgaaactgtagtgtggttgggccacttccagtatta
ttgctggcagcagaaatagctgttgctccagccaatgatgacgagggaagtgatgttgat
gataatgatcatggaagtgatgaagatgcaatggagattgattgcaagtcgggtggacag
cacgaagagaagattatgtctttacctgataaatctgtgatgattatagtggatgggtgg
ctttattttcagtcgaaagctcttgacgttgctcagatatattgcttgagggaacgcctg
tctgcggcaatactgttcaaggttactcatgcaaaggaagttttgcctcctgatcttggg
gagtctatttatgctatagcctgtgttctatcttatgatggtcaatctgggattccattg
caaaagtcaaaccaggttcccgtctcaaatggaactgtaaagttgagcgattaccctccc
agtgttccgtcaccacgggtttccagaaacagaatccggccgtccccgtcacaagttcca
gttggaaaggtaaacgttaaagtgaaaaagaagaaagcagcggaattgaagcagccatta
gttcagagtgctcccaggaagcctttaccacaagctactgatgcaaagttgagtaacgac
ccatcaattcaaagtgttcccccaccacccggttcaaacacaaccttgccgcccccgtcg
caagttccagtcccggtaggtcctgtcgcaggaaacaaacggaagaagcgccggaatcag
gccggttaa
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