Fragaria vesca (woodland strawberry): 101297486
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Entry
101297486 CDS
T02666
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
101297486
Enzymes [BR:
fve01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
101297486
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
101297486
NCBI-ProteinID:
XP_004288871
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Position
LG1:complement(4498103..4502380)
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AA seq
640 aa
AA seq
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MSSLGVELHIEDNHVIMDNGIVQVTLSNPGGIVTGIQYKGIDNLLEVLNEEANRGYWDLV
WSETGSIGTTGTYDRIVGTKFTVIVESEEQVEISFTREWNHDDMNVPLNIDKRFVMLRNS
SGFYSYAIYEHLKEWPAFNLPQTRITFKLRKEMFQYMAIADNRQRNMPLPDDRLPERSQI
LNSDFPEAVLLVNPIEPQYKGEVDDKYQYSCENQNLRVHGWICKDPHVGFWQITPSDEFR
SGGPLKQNLTSHVGPICLAMFLSAHYSGEDLVLKLKPDEPWKKVFGPVFIYLNSSSDEKD
SSPLWEDAKKQMMTEVQSWPYEFPASSDFPTSKQRGNVSGGILVRDGFVSDHHILGDGAY
VGLAPPGDVGSWQRDCKGYQFWTRVDENGYYSIKNIREGNYNLYAWVPGFIGDYRYGVAI
NITPGCDIQLGDLVYEPPRDGPTLWEIGFPDRTATGFYVPDPNPKYINKLYVNHPDRFRQ
WGLWERYAELYPKEDLVYTIGTSDYSKDWFFAQVTRKKDDGTYQGTSWKINFQIDNVNQT
KTHKLRVALATANIAELQIRVNDSNADTPLFTTGVIGHDNAICRHGIHGLYRLYSINVPG
TLLAKGDNTVFLTQAMSTSPFVGIMYDYIRLEAPSSSTSA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccttgggggtggaattgcatattgaggacaatcatgtgattatggataacggc
attgtccaagttacactatcaaatccaggtggaattgtcactgggatccaatataaaggc
atcgacaatttacttgaagttctcaatgaagaagctaatagagggtactgggatcttgtc
tggagtgaaaccggaagtatcggaacaacgggaacctatgatcgaatcgtaggaacaaaa
ttcacagttattgtggagagtgaagaacaagtagagatctcattcactagagagtggaat
cacgacgacatgaatgttcccctaaatatagacaaaaggtttgtaatgcttcgtaattcg
tcaggcttctactcgtacgccatctacgagcacttgaaagaatggcctgctttcaatctt
ccccagaccaggattacattcaagctcagaaaagagatgtttcagtacatggcgatagct
gataacaggcaacgaaacatgccccttcccgatgaccgattaccagaacgaagccaaatc
ttaaattcagatttcccagaagcagtccttcttgtcaatcctatagagccacaatataag
ggagaagtggatgacaagtaccaatactcatgcgagaatcaaaatctgcgggttcacggt
tggatatgcaaggaccctcatgtagggttttggcagataacacctagtgatgagttccga
tccggcggacctcttaaacaaaacctcacctcccacgttggtcctatttgtcttgcaatg
tttctgagtgctcactattcaggagaggaccttgtattgaagcttaaaccagatgagcca
tggaagaaagtattcggtcctgtttttatctatcttaattcctcatctgatgaaaaagat
tcatcaccactctgggaagatgcaaagaaacagatgatgacagaagtacaaagctggcct
tatgaatttccagcttcctctgattttccaacgtcaaagcaacggggtaatgttagtggt
ggaatacttgtccgagacggttttgttagtgaccatcatatacttggcgatggtgcttat
gttggactggcaccacctggagacgttggatcatggcaaagagattgcaagggttaccag
ttttggactagggtggatgagaatggctattactctatcaaaaatatacgtgagggcaac
tataatctctacgcgtgggttcctgggtttattggagattatcgctatggtgttgccatt
aacataactccaggctgtgatatccagctgggtgatcttgtatatgaacctccaagggat
gggccaacattgtgggaaattggtttccccgatcgcactgctactggattctatgtccct
gatcccaatccaaagtatatcaataaactttatgtaaatcatcccgacaggtttaggcag
tgggggttatgggaaagatatgccgagttatatcctaaagaggatttagtttacactatt
ggaactagcgactattctaaagactggttctttgctcaagttaccaggaagaaagatgat
ggtacataccaagggacttcctggaaaatcaattttcagattgacaatgtcaatcagacc
aaaacccacaaacttcgagtagcccttgctactgcaaatatagcagagttacagattcgc
gtaaatgattcgaacgcagacactcctctgtttacgaccggagtaatcggacacgacaac
gcaatatgcaggcatggaattcatggtctctaccggctgtatagcataaacgtacctggc
acattgcttgcgaaaggtgacaatactgtgtttctaacacaagcaatgagcaccagccct
ttcgtgggaatcatgtatgactatattcgtttggaagctccatcatcttcaacttccgcc
tga
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