Fragaria vesca (woodland strawberry): 101297780
Help
Entry
101297780 CDS
T02666
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
101297780
Enzymes [BR:
fve01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
101297780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
101297780
NCBI-ProteinID:
XP_004288872
LinkDB
All DBs
Position
LG1:complement(4505191..4510872)
Genome browser
AA seq
706 aa
AA seq
DB search
MSTIPVGLGKGPIRPIFSLSTITWISAKLGTMILLLLFSSRLFLDGNMFIQATASENTTG
LQLHIFDQYVVMNNDILQVNLSKPQGMVTGIQYKGIDNLLEVLEDETNRGYWDLVWSAPG
ITRKKGAFDRIEGTNFTVIVETEDQIELSFTRMWDPSLEGKVVPLNIDKRFVLLRNSSGF
YTYAIYEHLNEWPAFNLTNTRTVFKLRKDKFHYMAISDTRQRHMPLPDDRSAERGQALAY
PEAVLLVNPVEPEFKGEVDDKYQYSIENMYNRVHGWIANDSQVGFWQITPSEEFKTGGPF
KQCLTSHVGPTTLAIFHSTHYSGEELILQFGTNEPWKKVLGPVFFYLNSLVNGTTNPIQR
LWEDAKQEMNDEVERWPYDFPASKDFLSPKQRGAVRGSLLVRERYVTDDKDVPGNGTWVG
LAAPGVVGSWQLECKGYQFWTKADSNGYFSIHGVRPGTYNLYAWVPGFIGDYRDVSEVVV
TPDGDVDVGTLVYEPPRTGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHTDRFRQYG
LWERYAELYPDNDLVYTIGVSDYTKDFFFAQVTRKMGNNTYKGSTWQIKFNLGNVDKNTT
YTLRISLATAHVSELQVRINDPETKNPPLFTTGEIGNDNTIARHGIHGLYRLYSVDIPSA
LLVEGNNTIFLTRELSVSPFQGIMYDYIRLEGPPSSNDNHNIGYSS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccattcctgttggattaggcaaaggaccaatccgccccattttttcgctttcc
acgataacatggatttctgcaaagctgggtaccatgattcttcttctcctcttctccagc
cgtttatttctggatgggaacatgttcatccaagccactgcttcagaaaatacaacaggc
ctgcaactgcatatcttcgatcaatatgtggtgatgaacaatgacattcttcaagtcaat
ctttcaaaacctcaggggatggttaccggaatacaatataaaggcatcgacaatttactt
gaagttcttgaagatgagaccaacagagggtactgggatctggtttggtctgcaccagga
atcacgagaaagaaaggcgcatttgataggatcgaaggaacaaattttactgttatagtg
gaaactgaggatcagatagagctttcattcaccagaatgtgggatccttctctagagggc
aaagttgttcctttaaatattgacaaaaggttcgtgttgcttcgtaactcgtcaggtttc
tacacttacgccatttatgaacacctgaacgaatggcctgcttttaacttgaccaacacc
aggactgtgtttaagctcagaaaagacaagtttcattacatggcaatttcagacaccagg
caaagacacatgccgcttcccgatgatcgatcagcggaaagagggcaagcactggcttac
ccagaggccgtcttgctcgtcaatccggtcgagccagagttcaaaggagaagtggatgac
aaatatcagtattcgattgagaacatgtataaccgggtgcatggatggatagcaaatgac
tcgcaggttggattttggcagatcactcccagtgaagagtttaaaactggaggacccttc
aagcaatgcctcacttcacatgtggggcccaccacccttgccatatttcacagcacccat
tactcaggagaggaactgatattacaattcgggaccaatgagccatggaagaaagtgctt
ggtccagtctttttctatcttaattctttggttaatggaacgactaaccctatccagcgt
ctatgggaggatgctaagcaagagatgaacgatgaagttgaaaggtggccatatgatttt
ccagcttcgaaggactttctgtcgcctaagcaacgaggtgcagttcgcggcagcttacta
gttcgcgaaaggtatgttacggatgataaagacgtacccggaaatggaacttgggtaggg
ttggcagctccaggagttgttggatcctggcagttagaatgcaagggttaccaattctgg
accaaagcagacagtaacggctacttctctattcatggcgtacgtccagggacctataat
ctttacgcatgggttcctggatttattggtgattaccgagatgtttctgaagttgttgta
actccagatggtgatgttgatgtgggtacccttgtctatgagcctccgagaactggccca
actttgtgggaaataggtatccccgatcgaactgctgcagaattttacgtcccagatcct
aatccaaagtacattaacaaactctacgtcaatcacactgacaggtttagacaatatgga
ttatgggaaagatatgcagagttgtatcctgacaatgatttggtttacacaattggagtt
agcgattatacaaaggatttcttctttgctcaggttaccaggaagatgggtaataacaca
tacaaaggatcaacatggcagattaagttcaaccttggcaatgtggacaagaacactacc
tacaccctacgaatatcacttgcaacagcacatgtttctgagttacaagttcggatcaat
gaccctgaaacaaagaatcctcctctatttactaccggagagattgggaacgacaacacg
atcgccaggcatggaattcatggactgtacaggctatacagtgtggacattccaagcgct
ttgctggtcgaaggaaataataccatatttctaacacgagaattgagtgtcagccctttc
cagggaatcatgtatgattacattcgtttagaaggtcccccgtcttctaatgacaaccat
aatattggatatagttcatag
DBGET
integrated database retrieval system
