Fragaria vesca (woodland strawberry): 101297997
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Entry
101297997 CDS
T02666
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03022
Basal transcription factors
fve03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101297997
09124 Replication and repair
03420 Nucleotide excision repair
101297997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101297997
03400 DNA repair and recombination proteins [BR:
fve03400
]
101297997
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101297997
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101297997
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
101297997
NCBI-ProteinID:
XP_004294031
LinkDB
All DBs
Position
LG3:8598326..8602942
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AA seq
453 aa
AA seq
DB search
MPEVRIIAKNFMDMVAALPAMKLDKLYDNSFICEAILRSLPPLAKKYVLQMLCVEFPVNS
KSMEEWVLPDGASKHRVAVDRLVQLRIFTETRKKGDVTYTLNPIFQTNLNKLLVYGVVLP
REPMPSNVTVRLPSSEELEAFALEQWECFLLQLINSSQTDRPSNISSSMMKTFQRGLVTQ
RDREAPRLTESGFQFLLMDTNAQLWYIIREYITSSEERGIDSADLIAFLLELSFHVTGEA
YNINTLTELQKNTIKDFTDLGLVKLQQGRKESWFIPTKLATNLSVSLTDTSSRKQGFVVV
ETNFRLYAYSSSKLHCEILRLFARVEYQLPNLIVGAITKESLYGAFDNCITAEQIISFLK
QNAHPRVAERIPSVPENVTDQIRLWETDLNRVEMTNAYIYDEFPSRDLFDGAVDYARSYN
GLLWEAPDDSKKMRLVVRSENHVHMREYLSGQK
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaggtgaggataatagcgaagaacttcatggacatggtggccgccttgcccgcc
atgaagctcgataagctctacgacaactccttcatctgcgaagccattctcaggtctctt
ccgccattggctaagaaatacgtgctgcaaatgctgtgcgtggagtttccggtcaactcg
aagtcaatggaggagtgggtgctgccggatggggcctccaagcatcgggttgctgttgat
cgcttggttcagttgagaatattcactgagaccaggaagaagggggatgttacgtataca
ttgaatccgatatttcaaactaatctcaacaagctcctggtctacggtgtagttttgcca
agagaaccaatgccttcgaatgtcacagtgaggctcccgagctcagaggagcttgaggct
tttgccctagaacaatgggagtgtttcttgctgcaacttatcaactcatctcaaactgat
aggccgtcgaacatcagttcttctatgatgaaaactttccagcggggtcttgtgactcaa
agagatagagaagctcctcggttaactgaaagtggttttcaattcttgctaatggataca
aatgcacaactttggtacatcatcagagaatatatcactagctcggaggagcgtgggata
gattcagcagatttgattgcattcctgctagagctaagttttcatgttacaggcgaggca
tataacataaatacattgactgagcttcagaagaatacgatcaaggacttcacagatttg
ggattggtcaaacttcagcagggcaggaaggagagttggtttatacctactaaactagct
actaatctttctgtgagcttgacagacacatcatcgaggaaacagggatttgtagttgtg
gaaacaaactttaggctgtatgcctactcctcatctaaattgcattgtgaaattttgcgt
ctttttgcaagggtagaatatcaacttccaaacctcatagttggagcaataacaaaagaa
agtttgtatggtgcttttgacaattgcatcactgcagaacagataatttcttttctaaag
caaaatgcacatccacgtgttgcggagaggataccatctgtacctgagaatgtcacggat
cagattaggctctgggaaactgatctaaacagagttgagatgactaatgcatatatatac
gatgaatttccatccagggatctctttgacggtgctgttgactatgcgagaagctacaat
ggtttgctatgggaggctccagatgattcaaaaaagatgcgtttggtggtcaggtctgaa
aaccatgttcacatgcgagaatatctttcgggtcaaaagtag
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