Fragaria vesca (woodland strawberry): 101298056
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Entry
101298056 CDS
T02666
Name
(RefSeq) probable polygalacturonase At1g80170
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve00040
Pentose and glucuronate interconversions
fve01100
Metabolic pathways
Module
fve_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101298056
Enzymes [BR:
fve01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
101298056
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Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
NosD
Motif
Other DBs
NCBI-GeneID:
101298056
NCBI-ProteinID:
XP_004287324
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Position
LG1:3150441..3153613
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AA seq
408 aa
AA seq
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MGSYLFLVFLGIVYVITASSEHEHANTTRATFNVLDYGAVSGRHTDSGMAFWEAWNATCS
SEAENSTLIIPRMRFLLSPITFDGPCKPQRIKILILGRLLAPESPEAWRDFDPGQWLAFR
GVNGLEIAGPGTINGRGSGWWNQSCRYHPKLEGCTTLAPTALKVLSCKNIWLRDIHFINS
SQSHILIEGCDGIKIENLMIEAPGNSPNTDGIHIHASHNVIINNTIIASGDDCISIGDHI
SNIAISYIKCGPGHGISIGSLGKSGNVVQVENVHVSKVTLQGTTNGARIKTWQVGQGNVR
GVRFEDFFLDSVKNPIIIDQNYCKVRGACEELPTGVHISDVSFKNFYGTSSTNIAINLNC
SLSVPCTEILMKSIYLRSAIAGQNVTSSCRNAYGIAFGVVHPSPCFQI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggggagctatctttttctagtttttcttgggatagtttatgtgattactgcatcttca
gaacatgaacatgcaaacacaacaagggctacttttaatgtcttggactatggagctgtc
agtggtcgacacacagacagtggcatggcattctgggaagcatggaacgcaacatgtagc
tcagaagctgaaaactcaactctaatcattcccagaatgagatttctgttaagtccaatc
actttcgatggtccatgcaaacctcaaagaatcaaaattttgatattagggagacttttg
gcaccagagtcacctgaagcatggagggactttgatccaggtcaatggctagcttttcgt
ggtgttaatggactcgaaattgctggccctggtactattaatggaagaggaagcggctgg
tggaatcaatcttgcagatatcatcccaaactggagggatgcactacactggctccaaca
gctttgaaggttctgtcatgcaagaatatctggcttagagatattcacttcataaacagc
tcccaatctcatatcttaatagagggatgtgacggaatcaagattgagaatcttatgatt
gaggctccaggaaatagtcccaacactgatgggattcacattcatgcatctcacaatgtc
attatcaacaacaccatcatagcctctggtgatgattgcatatcaattggagaccatata
tccaatatagccatctcatatattaaatgtggccctggtcatggaataagcattggaagc
ctagggaaatccgggaatgtggttcaggtagagaacgttcatgtcagcaaggtcaccctc
caaggaactacgaacggagctcggatcaagacatggcaggttggccagggtaatgttcga
ggggtcagattcgaagatttcttcctggactctgttaagaaccccatcattatcgatcag
aactactgcaaagttaggggtgcctgcgaggaactgcccactggtgttcacataagtgat
gtctccttcaaaaacttctatggaacgtcgagtacgaatatcgccatcaatctgaattgc
agcctctcggttccttgcacagaaatattgatgaagtcgatataccttcgatctgctata
gctggacagaatgtaacttctagctgcagaaatgcctacggcattgcctttggagtagtt
catccaagcccttgtttccaaatctga
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