Fragaria vesca (woodland strawberry): 101298640
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Entry
101298640 CDS
T02666
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
101298640
Enzymes [BR:
fve01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
101298640
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Chromo_MORC2_6th
Endotoxin_C
Motif
Other DBs
NCBI-GeneID:
101298640
NCBI-ProteinID:
XP_004287408
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Position
LG1:complement(4487585..4495358)
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AA seq
638 aa
AA seq
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MSSQAVKLHIQDHHVILDNGILQVTLSKPGGIITGIQYNGIDNLLEIQNKESDRGYWDLV
WSEAGSVGTTGTFDVIKGTKFTVIVESEEQVEISFTRNWNHKNKHVPLNIDKRFIMLRNS
SGFYSYAIYEHLKEWPPFNLPQTRITFKLRKDKFQYMAIADNRQRNMPLPDDRLPDRSEV
LDFPEAVLLVNPIEPEFKGEVDDKYQYSSKNQNLQVHGWICMDPPVGFWQITPSNEFRSG
GPLKQNLSSHVGPTCLAMFLSAHYSGEDLVLKLKPDEPWKKVFGPIFIYLNSTPEAIDSL
SLWEDAKKQMVTEVQTWPYKFPASTDFPPSHERGNLSGRIQVQDRYLSDTYILAKGAYVG
LAPPGDPGSWQRDCKGYQFWTRADENGYYTINDIREGAYDLYAWVPGFIGDYRYDETINI
TAGCNIDIGDTVYKPPRSGPTLWEIGIPDRSAAEFYVPDPNPKYLNKLYVNHPDRFRQYG
LWERYEDLYPEEDLVYTVGVSDYTKDWFFAHVTRKQVDGKYQGTTWKIKFQLDHVNQTKP
YTLRIALATANVAELQIRVNDSKTDSPLFTTGVIGKDNTIARHGIHGLYWLYSIDIPGTL
LLEGVNTVFLTQAMSSSPVQGLMYDYIRLEGPSSSTST
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcccaagctgtgaaattgcatattcaggatcatcatgttattttggataacggc
atacttcaagttacactatcaaaaccaggtggaattataactggaatacaatataatggc
atcgacaatctgcttgaaattcagaataaagaatctgatagagggtattgggaccttgtt
tggagtgaagcaggaagtgtcggaacaaccggaacatttgatgtaattaaaggaacaaag
ttcactgtaatagtggaaagcgaggaacaggtagagatatcattcacaagaaactggaac
cataagaacaagcatgtcccgctaaatatagacaaaaggttcataatgcttcgtaattcc
tcaggcttctactcgtatgccatctatgagcacttgaaagaatggcctccatttaacctt
ccacagaccaggattacattcaagctcagaaaagataagtttcagtatatggccatagca
gataacaggcaaagaaatatgcctcttcctgatgaccgattaccagatagaagcgaagtt
ttagattttccagaggcagttcttcttgtcaatcccatagagccagaattcaaaggagag
gtggatgacaagtaccagtactcctccaagaaccagaacttgcaagttcacggttggata
tgcatggatccacccgtagggttctggcaaataacacccagcaatgagtttcgatctggc
ggacctcttaaacagaacctctcctcgcacgttggtcccacttgtcttgcgatgtttctc
agtgctcactattcaggagaagaccttgtgctaaagctcaagccagatgagccatggaag
aaagtgtttggtcctatttttatctatctcaattccacacccgaagcaatagactcattg
tcgctctgggaggatgcaaagaaacagatggtgacagaagtacaaacttggccttacaag
tttccagcttctaccgactttccaccatcacatgaacggggtaatcttagtggcagaata
caggttcaagataggtacttaagtgacacttacatactcgccaaaggtgcttatgtgggc
ttggcaccccctggagaccctggatcatggcagagagattgcaagggctaccagttctgg
acaagggcagatgagaatggttattacactataaatgatatacgtgagggcgcctatgat
ctatatgcatgggttcctggttttataggagattatcgctatgatgaaactattaacata
accgcaggttgtaatattgacattggtgatactgtatataaaccgccaagaagtggacca
acattgtgggaaattggcatccctgatcgttctgcagctgaattttatgttcctgatcct
aatccaaagtatcttaataaactttatgttaaccatcctgacaggtttaggcagtatggt
ttatgggaaagatatgaagatttatatcctgaggaggatttagtatacaccgttggtgtt
agtgactatactaaagattggttcttcgctcacgttaccaggaagcaggttgatggcaag
tatcaaggaactacatggaaaatcaagtttcaacttgaccatgtcaatcagacaaaacca
tacacacttcggattgcccttgctactgcaaatgttgcagaattacagattcgtgtaaat
gattccaaaacagactcaccactatttacaactggagtgataggaaaagacaacactatt
gctagacatggaattcatgggctctactggctgtatagcatagacataccgggcacattg
cttttggaaggagtaaatacagtgtttctaacccaagccatgagcagcagccctgtccag
ggccttatgtatgactatatccgtttagaaggtccatcatcttctacttctacctaa
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