Fragaria vesca (woodland strawberry): 101298786
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Entry
101298786 CDS
T02666
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101298786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101298786
03019 Messenger RNA biogenesis [BR:
fve03019
]
101298786
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101298786
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101298786
U7-dependent histone pre-mRNA processing factors
101298786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
101298786
NCBI-ProteinID:
XP_004296505
LinkDB
All DBs
Position
LG4:4292145..4295998
Genome browser
AA seq
693 aa
AA seq
DB search
MASSTAGVKRRETSSSSAAKAEDKLVVTPLGAGNEVGRSCVHMTYKGKTVLFDCGIHPAF
SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYHLLL
KDYVKVSKFSVEDMLFDEKDINASMDKIEVIDFHQTVEVEGIRFWCYTAGHVLGAAMFMV
DIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQHHQPRTIREKRFTEAIH
TAISRGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKKCLSVYETYTL
SMNDRIQNAKSNPFIFKHISPLKSIENFKDVGPSVVMASPGTLQSGLSRQLFDMWCSDKR
NACVIPGYVIEGTLAKTIINEPKEVTLMNGLAAPLNMSIHYISFSAHADSVQTSAFLEEL
RPPNIILVHGESHEMGRLKEKLMTQFRDRNTKILTPRNCQSVEMHFNSQKMAKAIGKIAE
RTPEVGEKVSGLMVKKGFSYQIMASEDLHVFSQLSTANVTQRITIPYATSFMVINHRLRQ
IYEIVEPSEDAESGVPTLKVHDRVTVRQDTDKHISLHWTSDPISDMVSDSIVALILNINR
EVPRVVIEAEDTTAEEENGRRTERVIHALLVSLFGDVKPGENGKLVISVDGNVAQLDKQS
GDVESENEGLKERVKTAFRRIQSAVRPIPLFAS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttcgacggcgggagtaaagcggcgcgagacgtcgtcgtcttcggcggcaaaa
gcggaagacaagctggtcgtgactccattaggcgccggaaacgaagtgggtcggtcttgc
gttcacatgacctacaagggcaaaaccgtcctttttgattgcggaatccacccggctttc
tccggcatggctgctttgccctacttcgatgagattgatccttccactatcgatgtcctt
ctcgttacccattttcacttggatcatgctgcatccctcccttacttccttgagaagacc
actttcaagggccgagtcttcatgacatatgcaacgaaggctatctaccatttgcttttg
aaagattatgtgaaagtcagcaaattttcagttgaagatatgttgttcgacgagaaggac
ataaatgcttctatggataaaattgaggttattgatttccaccaaacagtagaagtggag
ggcatccggttttggtgctacactgcaggtcatgtccttggtgctgctatgtttatggtt
gatattgctggtgttcgggtcctctacactggagattattcacgtgaagaagaccgacac
ctccgtgctgctgagatcccacagttctcccctgatatatgcatcattgagtccacatat
ggtgtccagcaccatcaacctcgaaccatccgagagaagcgattcacagaagctatacac
acagccatctctcgagggggtcgtgtcttgattcctgcatttgctcttggtcgtgcccaa
gagctgctcctgattcttgatgagtattgggcaaaccatccagagctccataatattcct
atatactatgcttccccactggcaaaaaaatgtttgtctgtttatgagacgtacaccctc
tcaatgaacgataggatccagaatgccaaatcaaatcccttcatcttcaagcacatatca
ccactaaagagcattgagaatttcaaagatgttggtccctcagtggtgatggcaagccct
ggtactcttcaaagcgggctgtcaaggcagctatttgatatgtggtgctctgataagaga
aatgcatgtgtgattccaggttatgtgattgaggggacacttgctaagacaatcatcaat
gaaccgaaagaggttactcttatgaatgggcttgccgctcctctcaacatgtccatccat
tacatttcattctctgctcatgcagactctgttcagacaagtgcatttttggaggagctg
aggcctcctaacatcattcttgttcatggagaatctcatgagatgggaaggttgaaagag
aagctaatgactcaatttcgtgatcggaacacaaagatcctcacaccaaggaattgtcag
tcggttgaaatgcacttcaactcgcagaagatggctaaagccattggaaaaattgctgaa
aggacccctgaagttggtgaaaaagttagcggtttaatggttaagaaaggcttcagttat
cagataatggcctctgaagatcttcatgttttctcacagctgtccacagcaaatgtcact
cagcgcattactatcccgtacgctactagcttcatggtgataaatcatagactgaggcaa
atatatgagatcgtagagccttctgaggatgcggaatctggagtgccaactttgaaagtg
catgatcgagtcacagtgaggcaggacacagacaaacatatttcactgcattggacatca
gatccgataagtgacatggtgtcggactcaattgtggctctaatcttgaatatcaaccgg
gaagtccccagggttgtcattgaagcggaggacacaacagcagaggaagagaatggtagg
aggacagaaagggtcattcatgcacttcttgtatcactctttggggatgtgaagcctgga
gaaaatgggaagttggtgatcagtgttgatggaaatgtggcacagcttgataaacaaagt
ggcgacgttgagagtgaaaatgaaggcctcaaggaaagagtgaagacagcatttcgtcga
atccaaagtgcggtcaggccaattcctctctttgcatcttag
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