Fragaria vesca (woodland strawberry): 101299133
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Entry
101299133 CDS
T02666
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04120
Ubiquitin mediated proteolysis
fve04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101299133
04120 Ubiquitin mediated proteolysis
101299133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fve04121
]
101299133
Enzymes [BR:
fve01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101299133
Ubiquitin system [BR:
fve04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101299133
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-RING_16
zf-RING_Vps41
zf-RING_11
zf-RING_5
zf-ANAPC11
FlxA
zf-C3HC4_4
zf_RING_Vps8
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
101299133
NCBI-ProteinID:
XP_004307873
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All DBs
Position
LG7:20338187..20342073
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AA seq
538 aa
AA seq
DB search
MMRLQTYAGLSLIGTLAIIYHAFSSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQL
TKKLFLGKLREPEVERLNEQSWREVMEILFAITIFRQDFSVSFLAFVTALLLIKALHWLA
QKRVEYIETTPSVPTLSHVRIVSFLGFLFVVDSLFLYSAVRTIVATQKPSVCLFFAFEYM
ILATTTLSTFVKYIFYVTDMIMEGQWEKKHVYTFYLELIRDLLHLSMYLCFFIVIFMYYG
LPVHLIRELYETFRNFKIRVADYVRYRKITSNMNDRFPDATPEELNAGDATCIICREEMT
TAKKLLCGHLFHVACLRSWLERQHTCPTCRALVVPPDGRTGTARGQSGSRPDAHQQGTGI
SGATAQGSTSGGAAGDNMSHHEARLRAAAAAASIYEKSYVYPSANRLVWSSGYVALPLNR
HMAESSSAELHSQPQFATPGGPANLSLPQSPHYMFSPFHGANGERLGSGSNTTASQLEAQ
RKVLLHQIEILKNQLQILQKRKPEENAEGVPTLAADSKGKNVAPSSESDCGLGEDVVD
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcaaacctacgctgggctgagtttgatcggaaccctagcgattatttac
catgcgtttagcagcagaggccagttttacccagccatggtttatctatcaacctccaag
atcagcctggtgcttctcctcaacatgggcctcgtcatcatgtgtattctctggcaactg
accaagaagctcttcctcggcaagctccgggagccggaggtggagaggctcaacgagcag
tcgtggagggaagtcatggagattctgtttgcaatcacgattttcaggcaggacttttcg
gtgtcgtttctggcttttgttactgctctgttgctgataaaggctctgcattggttggcg
cagaagagagtggagtacattgagactactccttctgtgccgacgctgtcgcatgtgagg
attgtgtcgtttttggggttcttgtttgttgtagatagtctctttttgtacagtgctgtc
agaaccatcgtagccactcagaagccttcggtttgcctcttttttgcattcgagtacatg
atcctagcaacgacaacgctgtcaacatttgtgaaatatattttctatgtcactgacatg
attatggagggacaatgggagaagaagcatgtctacactttttatttggaacttattcgg
gacttgctccacttgtctatgtatttgtgcttcttcattgtgattttcatgtactatggc
ttgccagtgcacttgattcgcgaactctatgagacctttaggaactttaagattcgtgtt
gctgattacgtccgttatcgaaaaatcacttcaaacatgaatgatcggttcccagacgct
acacctgaagagcttaatgcaggcgacgcaacctgcatcatttgtcgtgaagaaatgaca
acagccaagaaactattatgtggacacctttttcatgtggcttgcttgcgatcatggttg
gagcgacaacatacctgcccaacatgcagagcccttgttgtacctcctgatggtcggaca
ggtactgctcgaggacaaagtggatcacgccccgatgctcatcaacaggggacaggcata
tcaggtgcaactgctcaaggatcaactagtggtggagctgctggtgataacatgagccat
catgaagcaagactccgagctgctgctgcagctgcatcaatatatgagaaatcttatgta
tatccatctgcaaacagactagtatggtcttctggatatgtggcacttcctcttaataga
catatggctgagtcctctagtgctgaattacattcacaaccgcagtttgcaacccctggt
ggacctgcaaacttgtcattgcctcaatctccgcattacatgttttctccttttcatgga
gccaatggggagaggttgggcagcggttcaaatacaacagcttctcagctggaggcccag
agaaaagttcttctgcaccagattgagatcctgaagaatcagctccaaattttacaaaag
cgaaaacccgaggagaatgcggaaggggtaccaacattagcagcagatagcaaaggaaag
aatgtggcaccttcttctgaatcagattgcgggcttggtgaggatgttgttgactag
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