KEGG   Fragaria vesca (woodland strawberry): 101299204
Entry
101299204         CDS       T02666                                 
Name
(RefSeq) protein CLP1 homolog
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101299204
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fve03019]
    101299204
Enzymes [BR:fve01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     101299204
Messenger RNA biogenesis [BR:fve03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     101299204
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N nSTAND3 AAA_22 CbiA ABC_tran ATP_bind_1 FtsK_SpoIIIE DUF1611 AAA_29 AAA_24 MMR_HSR1
Other DBs
NCBI-GeneID: 101299204
NCBI-ProteinID: XP_004302357
LinkDB
Position
LG6:4342532..4345570
AA seq 428 aa
MAGTGIRQVKLERECELRIEVGNDAPLKLRVLNGTAEIFGTELPPEIWLTFLPRLKFAVF
TWYGATIEMDGPTETDYTADETPNISYVNVHAVLDARRNRAKTLSSDDPDSPHAQGPRVM
VVGPTDSGKSTLAKMLLSWAAKQGWKPTFVDLDIGQGAITIPGCIAATPIEMPIDPVEGI
PLDMPLVYFYGHTTPTTNVDLYRVLVKELSQMVEKQLAGTAESQAAGLVINTMGWIEGAG
YELLLHAIDTFNANVVLVLGQEKLCSMLRDVLKNKPNVDVVKLQKSGGVVSRNLKFRQKS
RSNRIREYFYGLANDLSPHSNTANFSDLSVFRIGGGPQAPRSALPIGAEPAADPTRVVPV
NINRDLLHMVLAISYAKEPDEIISSNVAGFVHVTEVNVERKTITYLAPAAGELPGKFLIL
GSLTWLET
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggccggcaccggaatacggcaggtcaaactggagcgagagtgcgaactcagaatcgaa
gtcggcaacgacgcacctctcaagctccgcgttctcaacggcaccgccgagatcttcggc
accgagctcccccctgaaatctggctcacttttcttcccaggctcaaattcgctgtgttc
acttggtatggcgccacaatcgagatggacggccccaccgaaacggattacaccgctgac
gagacgccgaatatcagctatgtgaatgtgcatgccgtgttggatgcgcggcggaaccgt
gcgaaaacgctgtcgtctgatgatcctgattctcctcacgctcagggaccgagggtgatg
gttgtgggacctacggattccgggaagagtacgttggcgaaaatgctgctgagttgggca
gctaagcaaggatggaaacctacttttgttgatttggatatcggacaaggagctataaca
attcccggatgcattgcggctactcctattgaaatgcctattgatcccgtggaagggatt
ccccttgacatgccccttgtgtatttctatgggcacactactcccacgaccaatgtggat
ttgtacagagtgcttgtcaaggagctttctcaaatggtagagaaacaacttgctggtact
gctgaatctcaagctgctggactggtaatcaacaccatgggatggattgagggtgctggc
tatgagttgcttcttcatgcaattgacacattcaatgccaatgttgtcttggttttgggt
caggaaaagctttgcagcatgctcagagatgtactaaagaacaagcccaatgtggatgtt
gttaaacttcaaaaatcagggggagttgtatccaggaatttaaaattccgtcaaaaatcc
aggagtaataggataagggaatacttttatggccttgcgaatgatctcagcccacattct
aatactgcaaatttcagcgatttatctgtctttcgaatcggtggtggcccacaggcccct
cgttcagctttgccaattggtgccgagcctgctgctgatcctacaagagtggttcctgta
aatattaaccgtgatttgctccatatggttctcgctatttcatatgccaaggagcctgat
gaaattatctctagtaatgttgctgggtttgtccatgtcacagaagtcaatgttgaaagg
aagacaattacctaccttgcaccagccgctggtgaacttccaggcaaatttttgatacta
gggtccttgacatggcttgaaacatga

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