Fragaria vesca (woodland strawberry): 101299689
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Entry
101299689 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101299689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101299689
03009 Ribosome biogenesis [BR:
fve03009
]
101299689
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101299689
Spliceosome [BR:
fve03041
]
Complex A
U1 snRNP components
U1 related factors
101299689
Complex B
101299689
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
Pre-60S particles
Helicases
101299689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101299689
NCBI-ProteinID:
XP_004304637
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All DBs
Position
LG6:37203842..37210022
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AA seq
678 aa
AA seq
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MAATATASAGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYDRPTGSAPPPKAP
SAQYISSSVQVQQSSQGQRRDEGDDRYGRGSNGSSKFEAAPRNVHVVETARSAPVSSNNG
PSGPANAHGGSLIRGNGPSDTGSGLSAEAYCRRHEITAIGDNVPPPFTTFEATGFPSEIL
REVQNAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLLPGFMHLKRTRNNSQMG
PTVLVLSPTRELATQIQDEAMKFGKSSRIAVVCLYGGAPKGPQLRDIDRGADVVVATPGR
LNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEIPARRQTLMYTATWPKEVR
KIASDLLVNSVQVNIGNVDELVANKSITQHVEVMSSMEKHRRLEQILRSQEPGSKIIIFC
STKKMCDQLSRNLTRQFGAAAIHGDKSQAERDHVLSQFRTGRTPILVATDVAARGLDVKD
IRVVINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYAAELIKVLEGANQRVPP
EIRDLASRGGGMNRFRRWGSGSGGRDGGRSDSSYGGRDGGRGGGFGSSFSAGRYDRGPNN
SYDGKGLTRERSRSPERFNKAPPTAVGSGGWSFHKAMMEQRGRSSPPPPNRVKGVVDGFR
PSFYGLEEAEEGMIRQDD
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgcaactgcctctgctggtcctcgatatgctccagaggatccaactctc
ccaaagccttggaaaggattggttgatggtaaaactgggtatctctacttctggaaccct
gagaccaatgtgacccaatatgataggcctacgggctcagctcctccaccaaaggctcct
tctgcgcagtatataagttcttcagttcaagttcaacaatcttcacaaggacaacgtcgt
gatgagggagatgatcggtatggcaggggcagcaatggtagttcaaaatttgaggcagca
ccgaggaatgtgcacgtagttgagactgcaagaagtgcaccagtttcttctaacaatggt
ccaagtgggccagctaatgcacatggtggatctcttattagaggaaatggaccatcagac
actggaagtggtttgtctgctgaggcttattgtcgccggcatgaaattactgctattggt
gataatgtgcccccaccatttactaccttcgaagctacgggcttcccatcggagattctt
agagaggtacaaaacgctggattttctgccccgactccaattcaagctcagtcatggccg
gttgctcttcaaagtagagatattgtggccattgctaaaacgggatcagggaagaccttg
ggttacttgcttcctggatttatgcatctcaagcgcacccgtaataattctcagatgggt
ccaactgtgttggtgttatcaccaacaagggagctggccacacagattcaagatgaagca
atgaagtttgggaaatcttcaagaatagctgttgtgtgtttgtatggaggagcgccaaag
ggtccacaattgagagatattgacagaggagcagatgttgtggttgccactcctggtcgc
ttaaatgacattctagaaatgaagagaattagtctccatcaagtctcttacctagtgttg
gatgaggctgatcgtatgctggatatgggttttgaacctcaaataaggaagattgtgaag
gagatacctgctcgccgtcagacattgatgtacacagcaacatggcccaaggaggttagg
aagattgcatcagatctactggtcaactctgttcaggttaacattggcaatgttgatgaa
cttgtcgcgaataagtcgatcacacagcatgttgaagtgatgtcgtcaatggagaaacac
agacggttggaacagatattgcgatcgcaagagccagggtccaagataattatattttgc
tcaaccaaaaagatgtgtgatcaactttctcgcaacctaacccgccaatttggagctgct
gcaattcatggtgacaaatctcaggctgagagggatcatgtcctgagtcaatttcgcaca
gggaggactccaattcttgtagcaactgatgttgcagctcgaggattggatgttaaggac
ataagggtggttatcaattacgacttccctactggagtagaggattatgttcacaggatt
gggagaactggaagggcaggtgccactgggttggcatacacattctttggtgatcaggat
gcaaaatatgctgcagaactcattaaggttttggaaggagctaaccaacgtgtaccccca
gaaattcgtgatttggcttcacgtggtggtgggatgaataggttcagacgttggggctct
ggatctggtggtcgtgatggtggacgaagtgattcaagctatggtggaagagatggtgga
aggggcggtgggtttggatcttctttctctgctggcagatatgaccgaggtccaaataat
agttatgatggcaaaggtttgactcgggagcgtagtcgtagtcctgaaaggttcaacaaa
gctccgccaacagctgttggctctggaggttggagttttcacaaagcaatgatggaacaa
cgcggacggtcatcaccgccacctccaaatcgtgttaagggagtagtggatggtttccgt
ccttctttctatggactggaagaagctgaggaaggcatgatacgtcaagacgactga
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