Fragaria vesca (woodland strawberry): 101299914
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Entry
101299914 CDS
T02666
Name
(RefSeq) squalene synthase-like
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve00100
Steroid biosynthesis
fve00909
Sesquiterpenoid and triterpenoid biosynthesis
fve01100
Metabolic pathways
fve01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
101299914
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
101299914
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
fve01006
]
101299914
Enzymes [BR:
fve01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
101299914
Prenyltransferases [BR:
fve01006
]
Terpene biosynthesis
Squalene/phytoene synthase
101299914
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
PhoU_div
Motif
Other DBs
NCBI-GeneID:
101299914
NCBI-ProteinID:
XP_004290304
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Position
LG2:10894920..10902101
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AA seq
413 aa
AA seq
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MGSFGAMLKHPDDIYPLLKLKMAARNLEKQIPPQPHWAFCYTMLHKVSRSFALVIQQLGP
ELRNAVCIFYLVLRALDTVEDDTAVETDVKLPILIAFHRHIYDPKWHFACGTKEYKVLMD
EFHHVATAFLELGKGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGL
SKLFHAAELEDLATDEHSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVNKL
EDLKYEENSDKAVQCLNDMVTNSLLHIEDCLKYMSDLRDPAIFKFCAIPQVMAIGTLALC
YNNIEVFRGVVKMRRGLTAKIIDKTRTMADVYAAFYDFSSIIKSKVDKKDPNATKTLSRL
ESVQKTCRESGALTNSRKSYIIKSEQSFNSALIMVMIIILAIIYAYVSASPRF
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgggtagctttggggcgatgctgaaacacccagatgacatataccctcttttgaagttg
aaaatggcggcgaggaatctggagaagcagatccctccgcagcctcattgggctttctgc
tacaccatgcttcacaaagtctctcgcagcttcgctctcgttattcagcagctcggccct
gagctccgcaatgctgtttgtattttttatctggttcttcgagctctagacactgttgag
gatgatacagcggtagagacagatgtcaaacttcctatcctgattgctttccatcgtcac
atatatgatcccaagtggcattttgcatgtggtacgaaggagtacaaagttctcatggac
gagtttcatcatgttgcaactgcttttctggaacttgggaagggttatcaggaggcaatt
gaggatattaccaaaagaatgggggcagggatggccaagtttatctgcaaggaggtagaa
acagttgaggactatgatgagtactgccactatgtggcaggacttgttggtttaggtttg
tccaagcttttccatgctgctgagttggaagatttggctacagatgaacactcaaattca
atgggcttatttcttcagaaaacaaacattattcgagattatctggaggatattaatgaa
atacccaagtcacgcatgttttggccgcgccagatctggagtaaatatgttaacaaactc
gaggacttgaaatatgaagaaaactcagacaaggcagtgcagtgtttgaatgacatggtc
actaattctttgctacatatagaagactgcttgaagtacatgtctgatttgagagatcct
gctatatttaagttttgcgctatccctcaggtcatggcaattggcacactagcactatgc
tacaacaacattgaggtcttcagaggtgtggtgaaaatgaggcgtggtcttacagcaaaa
atcattgataaaacaagaacgatggctgacgtctatgccgctttctatgatttttcatcc
attataaagtccaaggttgacaagaaggatcccaatgcaacaaaaacattgagcaggctg
gaatcagtgcagaaaacatgcagggagtctggagcactaaccaacagcaggaaatcatat
ataatcaagagtgagcagagtttcaattcagctctgattatggtgatgattatcatattg
gccatcatttacgcttatgtctctgccagcccaagattctaa
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