Fragaria vesca (woodland strawberry): 101299940
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Entry
101299940 CDS
T02666
Name
(RefSeq) structure-specific endonuclease subunit SLX1 homolog
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
101299940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fve03400
]
101299940
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
101299940
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
GIY-YIG
DUF6882
Motif
Other DBs
NCBI-GeneID:
101299940
NCBI-ProteinID:
XP_004294742
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Position
LG3:20728302..20730280
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AA seq
400 aa
AA seq
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MRQQRSKNPSETLTMPEEEEGGRFFACYLLTSRCPRYKGHTYIGFTVNPRRRIRQHNGEI
GRGAWRTKKKRPWEMALCIYGFPTNTSALQFEWAWQNPYVSKAVRKAAANFKSLGGFANK
IKLAYTMLTLPPWESLNLTVNFFSTEHTKHAAGCPRLPEQMKVKICPMDELPSCISDDVS
DNEDEWYNEKENDETMNISTLSEPVVPNSADDQHNDIGNRSNEVYAQDKEVGEDEWYNDK
VSDEAMNSGLSWEETLSNFMVRDSANDLEMDTGNTSSQVSRCNEEVQEDITGEFITSPLR
MPYSNVIPSFDTEASKNIGLFDDSTVELDRPARKQSPAIIVADEEQSPRNSYLRPCDSEV
VDLITPSPLCRNGLCGKKSRVPTSYPEIIDLTKSPNFIQL
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgaggcagcagagaagcaagaacccatcagaaaccctaaccatgccagaagaagaagaa
ggaggccgattcttcgcttgctatcttctgacgtcacgctgcccccgttacaagggccac
acctatattggattcacggtgaatccacggcggaggatacggcagcacaatggggaaatt
gggcgaggtgcttggaggaccaagaagaagcggccgtgggagatggccttgtgcatttat
ggcttcccaactaacacttcagctctccagtttgaatgggcctggcagaacccatatgta
tcaaaggcagtaaggaaagctgcagcaaactttaaatccctcggaggatttgccaataag
atcaaacttgcatacacaatgctcaccttaccgccttgggagagcttgaacctcaccgtg
aactttttttcaactgagcataccaagcatgctgctggttgtccacgcctcccggaacag
atgaaggttaaaatttgccccatggatgagcttccttcatgtatatcagatgatgtttcg
gacaatgaagatgagtggtataatgaaaaagaaaatgatgaaactatgaatatcagtaca
ttatcagaacctgtagttcctaattcggcagatgatcagcataatgatattggcaataga
agtaacgaagtctatgcacaggataaagaagtaggagaagatgagtggtataatgataag
gtatctgatgaagctatgaacagtggtctatcatgggaagaaacattatcaaattttatg
gttcgtgattcagcaaatgacctggaaatggatactggcaatacatctagtcaagtttct
agatgcaatgaagaagtacaagaagatatcactggggaatttatcacatcaccactgaga
atgccatactccaatgtcattccatcatttgatacagaagcaagtaagaatataggtttg
tttgatgacagtactgtcgagttggatcgacctgcaaggaaacaatcaccagctataata
gttgcggatgaggaacagtcaccaagaaatagttatctcaggccttgtgattctgaggta
gtggatttgataactccatcaccattgtgcagaaatggtttatgtggcaagaagagtaga
gttcctacatcttatcctgaaattatcgacctgaccaagtctcctaatttcatccagtta
tag
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