Fragaria vesca (woodland strawberry): 101300371
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Entry
101300371 CDS
T02666
Symbol
LOS4
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03013
Nucleocytoplasmic transport
fve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101300371 (LOS4)
03015 mRNA surveillance pathway
101300371 (LOS4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101300371 (LOS4)
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101300371 (LOS4)
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101300371 (LOS4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
101300371
NCBI-ProteinID:
XP_004304323
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All DBs
Position
LG6:32380917..32384982
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AA seq
507 aa
AA seq
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MAETDAAAATTTPPVETSSAESATTASPPPAKPVVKRWADEEDDPPEEPQKTEAPSTSEQ
PELDVAALKITENKFLDEPEDSHISAVTADDTPYTSASSFEDLNLSEAVLKGLYVEMGFK
KPSKIQAITLPMILTPPHKDLVAQAHNGSGKTTCFVLGMLSRVDPNVKAPQALCICPTRE
LAIQNMEVLQKMGKYTGITAECAVPSDRERNAPSPNHRAPVSAQVVIGTPGTIKRYMNMK
KLGVNRVKILVFDEADHMLAEDGFQDDSLRIKRDTEKASPNCQVLLFSATFNERVTNFVS
RVVKRGNNQLFVKKEELSLEGVKQYKVYCPDELSKIEVIKTKIFDLGEKLGQRIIFVRTK
NSARMLYQQLTDDGYAVTAIQGALNTEDRDKIIKEFKEGLTQVLISTDVLARGFDQQQVN
CVVNYDLPVKYSAGPRSQPSEPDYEVYLHRIGRAGRFGRKGAVFNLICDENDELVMSKIE
QYFDIQVPEVKNTDEAFEGALKTAGLL
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaccgacgccgccgccgcaacaacgacgccaccagtcgaaacttcatccgcc
gagtccgccaccactgcgtctccgccgccggcgaagcccgtggtaaaacgctgggccgac
gaggaggatgatccgccggaggagccgcagaaaaccgaagctccgtctacttcagagcag
ccggagctcgatgtcgccgcactgaagatcaccgagaacaagttcctcgacgagccggaa
gactctcacatcagcgctgtcacggccgacgacacgccgtacacgtcggctagtagtttt
gaggatctgaatctatcggaggcggtgctgaagggcttgtatgtagagatggggttcaag
aagcccagtaaaatccaggcgatcactttgcctatgattctgactcctccgcacaaggat
ctggttgctcaggcccacaatggctccggcaagacgacctgtttcgtgctcgggatgctc
agccgtgttgatcccaatgtgaaagctccccaggctctctgcatttgccccactagagag
ttggctattcagaatatggaggttcttcaaaagatggggaaatacaccgggataactgca
gagtgtgctgtcccttcagatagggagaggaatgcaccttcgcctaatcaccgggcccca
gtgtcggctcaagttgtgattggaactcctggtactatcaagagatatatgaatatgaaa
aagctgggtgtaaaccgcgtgaagatccttgtttttgatgaggctgatcacatgctggct
gaggatggcttccaagatgattctttaaggataaagagggacacagaaaaagctagccct
aactgccaggttcttctgttttcagctacatttaatgaaagagtcacaaattttgtctca
agggttgtgaaacgtggtaacaatcaactttttgtcaagaaagaagagctatctttggaa
ggtgttaagcagtacaaggtgtactgtcctgatgaactgagcaagattgaggttatcaaa
accaaaatttttgacctgggagaaaaactaggacagaggattatatttgttcggacaaaa
aatagtgcaagaatgttgtatcaacaacttactgatgatggttacgcggttactgctatt
caaggtgccctcaacactgaggacagagacaaaattatcaaagagtttaaagagggttta
acccaagttctcatatcaactgatgtacttgccagaggctttgaccaacagcaggttaat
tgtgtcgtcaattatgatcttccagtcaaatattcagctggtccccggtcacaaccttca
gaacctgattatgaggtgtacctgcatagaattggcagagctgggcgttttggtcgcaag
ggagctgtgtttaatttgatttgcgatgaaaatgatgagttggtcatgtcaaaaattgag
cagtattttgacatccaagtaccagaggttaagaatacagatgaggcttttgaaggggct
cttaaaacagctggcttactgtag
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