Fragaria vesca (woodland strawberry): 101300415
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Entry
101300415 CDS
T02666
Name
(RefSeq) uncharacterized LOC101300415
KO
K14311
nuclear pore complex protein Nup188
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101300415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101300415
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101300415
BRITE hierarchy
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
101300415
NCBI-ProteinID:
XP_011457925
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Position
LG2:4629568..4645862
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AA seq
1960 aa
AA seq
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MATVDASLWWDPFSLLLTDLENAPLSDELPPNLVKKLKANHAWFVDTVSLFKPPSEKSKA
ALDSQLVKIGSHQLDVKPELKDKALTISSYLCLDEVQSYILVERSLKENNVALDSEAHEY
VHAVLIHYYIERQCLLKCTRSILMLALSLGIDSEERNSIKEEALKLISDGLEKKLIYVLQ
DLLSSNPPEEMDVDLFSLWAEETLIEDNLVLDILFLAYCESLCTCKGETWKALCLLYKGI
LSGSSNFEKLAISTEALHSSYQAKVQLLLILIETLDLESLLRMVHDEIPFRNGESAITLA
DIQEIEAIISTLNAFETKEAGPLILAWAVFLCLISSLPGKEENDILMEIDHVGYVRQAFE
ASSLTYFVEILESDVLKESDGPVAGYLSVLRTIISAFIAAYEINLQMEDGTLMLILDILC
KIYQGEESLCIQFWDRGSFIDGPIRCLLCNLESEFPFRTVELVRLLSSLCEGTWPAECVY
NFLDKSVGVSSLFEIANNSFRDVLSQTVETNFPLHVPGLEGLVIPSKTCGSILRLVGENT
ALVRWEYTQSGVLVLLMRLAQELYFKRNEEVLLILNLLSRMVTFSMAVCFALMDIGSSLH
FQSTGMSGQNNMWVVEMISTLVRRLSPTPSGAALMSVAINTLAKMLKCSPFHVAEVALKA
NMFDFEIGNNGSSSESWLLSGKLAKMLIIDCEHNDSDCTLTISVLDFTLQFMESGVKNDG
VLALIVFSLQYVLVNHVYWKYKLKHTRWRVTLKVLEVLKWCITSTCSGNLDEVILDRIFC
DSSIHNTLFQIVCTTPQTLERLCSSRLIELTEVEGLQLAICSVLDVLFIMLSKFTKDTSS
SLPIFHQAVFSSATKPIPLVAALVSFISYSRNPQIQVGAARVLSVFLMSADIIQPYLFGS
SFGLDDTQIGDLRHGISDIILEQSVLNEDLFVAVVNLLTSAARYQPAFLVAVLSTKVNKD
VQLSNSADVKLPTNEVLSRSSEFEKASVVDAVLHHVRRSNDLINSNPRILLNVLNFLRAL
WQDAARYLDILECVKRSENFWRNLSSSITVILSAKACPPENLTEAEADDFGYRYQCESSI
LEIMAHDVFLQKKLLHAESLVKQATESQGKIQNTGRTEKSEGESLEDILSAWCGSSVWGN
LTKSLSHSEYDTSLYLRAKVAASSVTALVMVKLAQGDAGSLSVPLFEKSRILSNKLRSHP
AFSEVLAKYSLRSYSAEKEQNYLILSDLYYHLQGEVEGREIGAGSFKALSRFLIESNIFQ
TYQLKYDGDLFITGKDAYMFDLERIRADLGLDFWDYSTWKDSKAIAETMLHHMKNVNSMV
FLTSSKLSALRALRSVLTVYLDDSLEAKSTAQEMSDQLVFPCIDHICQNFLDTVELLAPE
LGASEEIFHFLAAQAELLLYLMISAHKSLPPSVCILVLKTSAAGLKVLSDFQPLVTGSSV
SVVSSTVKLLLMLLLSAVKLSLVGGRDMVSVEDMAKISNMSLRLLPILCNHIASAEDCRL
SLTNMDLILRNFLTPNTWFPLIQNHLQLQHVILKLQDRKSLESVPIIMKFFLTLARVRQG
AEMLINHGFLSSLRFLFTEYLDDRSASVTMANSLSNSSDIMEKPKRIWGLGSAVITAMVQ
SLGDSSACSDVVENVIPYFFSEKAYIISYYLSAPEFPSDDHDKKRLRAQQRQTSLTELKE
TEHTLMLMCVLAKHWNTWVKAMKELDSQLREKSIHLLAFISRGTQRLGETASSSAPLICP
PMLKDELNSCKKPSFVNSSCGWFALSPLGCVSKPKVSAASITSMALTTKTQATANGYHIS
QSHFSDIIALQIYKNTFLLLKFLCLQAECASRRAEEVGFVDLDHFPELPMPEILHGLQDQ
AIAIITEVCEANRVKEIQIEVQSICCLLLQIMEMAMYLELCVHQICGIRPVLGRVEDFSK
EVKLLIKATETHAFMKPSLKSLKQIMVVVYPGLVQAEDFL
NT seq
5883 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgtcgacgcctctctctggtgggaccccttctctctcttactcaccgacctc
gagaacgctcctctctccgacgagctccctcccaatctggtcaagaaattgaaggccaat
cacgcctggttcgtcgacacagtctccctcttcaagccgcccagcgagaaatcgaaggcc
gctttggattcacagctcgtcaaaatcggctctcaccagctggatgtcaagcctgaattg
aaagacaaggctctcactatcagctcctatttgtgtctagatgaggtgcaatcgtacatt
ctcgtggagaggtctcttaaggaaaacaatgtagctcttgactctgaggcgcacgagtat
gttcatgcggtgttgattcactattacattgagcggcagtgcttgctgaagtgtaccagg
agtattctcatgcttgctttgtctctaggaattgactctgaagaacgtaacagtattaag
gaggaagcactgaagttgatttctgatggattggagaagaaattaatatatgtgctgcaa
gaccttttatcttccaatccccctgaagaaatggatgttgatcttttcagtttgtgggct
gaggagacactaatcgaagacaatttggttttggatattcttttccttgcttattgtgag
tcactttgtacttgcaaaggtgaaacatggaaagcattatgcttgctctataagggaatt
ttatctgggtcatctaactttgaaaagctggcaatatcaactgaagcactacattcttct
taccaagccaaagttcagcttcttctaattctaatagaaaccctagacctggaaagtctt
cttcgaatggtccatgatgaaatacctttcaggaatggtgaatctgctattactttggct
gatatccaagagattgaagcaataatttcaacgttaaatgcgtttgaaacaaaagaggcg
ggcccattaattcttgcatgggcagtgtttctttgtctgatttcatcacttccgggcaaa
gaagaaaatgacatactaatggaaattgatcatgttggttacgttcgccaagcatttgag
gcgtcatctttgacttattttgtagaaatccttgaaagtgatgtgttgaaggaatctgat
gggcctgttgctggttatctgagtgtgttgagaactattatatctgcatttatcgcagct
tatgagatcaatctccagatggaagatggcactcttatgttaatactggatattctttgc
aaaatctatcagggagaggagtcactttgtatccagttctgggaccgaggaagttttatt
gatggtcctatccggtgtcttctttgcaacttagagagtgaatttcctttcaggactgtg
gagcttgttcgccttctatcatccctttgtgaaggaacttggcctgctgaatgtgtgtac
aactttctggataagtctgttggggtatcatccttgtttgagattgcgaacaattccttt
agggatgtcctctctcaaactgttgagacgaacttcccattgcatgttcctggacttgaa
ggattggtcattcccagtaaaacttgtggcagtatattgagattagttggtgaaaatact
gctcttgttcgatgggagtatacacaatcgggggtgctagtgttgctcatgcgcttggcc
caagagctatatttcaaaagaaatgaagaagttcttcttatcctcaacctgcttagcagg
atggttacctttagcatggctgtgtgctttgccttgatggatattgggagctctttgcat
ttccaatcaactggcatgagtgggcagaataacatgtgggtggttgagatgattagcact
ttagtgagaaggttatctcctactcctagtggtgctgctctaatgtccgtggctataaac
actttggcaaagatgttaaaatgttccccttttcatgttgctgaggtggccttaaaagca
aatatgtttgattttgagattggcaacaatggttcatcaagtgaatcatggctactttct
ggaaaactggcgaagatgcttataattgactgtgaacataatgatagtgactgcacattg
actatatcagtgctggactttactctgcagttcatggaatcaggtgtgaagaatgatggt
gtactggctttaattgttttctctcttcagtatgttctagttaaccacgtgtactggaaa
tacaagttaaagcatactagatggagagtgacattaaaggtgcttgaagtgttgaaatgg
tgtattacatcaacttgctctggaaacctggatgaagtcatcctggacaggatattctgt
gattcatccatccataatactctctttcagattgtttgtacaacaccacaaacattagag
agactatgctccagtcgtcttattgagctaacagaggttgaaggtttacagctggctata
tgttctgttctagatgttcttttcatcatgctctccaaatttactaaggatacatcgtcc
agccttccaatttttcaccaagcagttttctcctcagctacaaaacctattcctttagtt
gcagctcttgtatcattcatatcttattctcgcaatccgcaaattcaagttggtgctgct
agggttctgtcagtgttcttgatgagtgcagatattatccaaccatatttgtttggaagc
agctttggcctagatgatacacagattggagatctgaggcatggaattagtgacataata
cttgagcagtcagtactgaatgaagatctctttgttgctgtagtcaacctgctcacttct
gctgcacgttatcagcctgcttttcttgttgctgtgttatccaccaaagtgaataaagat
gtccaactgagtaattctgctgatgtgaagctgccaacaaatgaagttctatcgaggtcg
tctgagtttgaaaaagcaagtgttgtggatgcagtgctgcatcatgttagaagatctaat
gatcttatcaacagcaatccccgtatacttctgaatgttctcaactttctaagagctctg
tggcaagatgctgctcggtacttggatattttagaatgcgtgaaacgctctgaaaatttc
tggagaaacttgtctagttctattacagtaattttgagtgcgaaagcttgtccacctgag
aatttaactgaggccgaagctgatgatttcggatatagatatcagtgtgaatcttcgata
ttagaaataatggcgcatgatgtgttcctgcaaaagaaactgttacatgcagagtcactt
gtaaaacaagcgactgaatcacagggcaagatacagaatacagggagaactgaaaaatct
gaaggagaaagtctagaggatattttatcagcctggtgtggaagctcagtttggggcaat
ctgaccaagtcactaagtcatagtgaatatgacaccagtctatatttgcgggcaaaggtt
gctgccagttcagtcaccgcccttgtcatggtgaaattagcacagggtgatgctggaagt
ttgtccgtgccattatttgagaagtcccgcatcctttcaaataagctcagaagtcatcct
gctttttcggaagtgttagctaaatactcactgcgtagttacagtgcagagaaggaacaa
aattatttgatactcagcgatctttattatcatctgcaaggggaggtagaaggccgtgaa
attggtgctggatcgtttaaagcactctctcggttcctaattgaatcaaacatttttcag
acataccaactaaagtatgatggcgatctttttataactggcaaagatgcatacatgttt
gatctggaacgtataagagctgatttgggattagatttttgggattattcaacgtggaag
gattcaaaggcgattgctgaaacaatgttgcatcacatgaaaaatgtgaactcaatggta
ttcctcacaagctcgaaactttccgcactgagagcattaagaagtgttctaactgtatac
ttggatgattcactggaggcgaagagcacagcgcaagagatgtctgatcaactggttttc
ccatgcatagatcacatatgccagaatttccttgatacagtagaattattggctccagaa
cttggtgcctctgaagaaatctttcacttccttgcagctcaagcagaattgcttctatac
cttatgatttctgcacacaagagcttgcctccatctgtttgcattcttgtgctaaaaaca
tcagctgctggcctcaaagtgttgagtgatttccaaccattagttactgggtcatcagtt
tctgtggttagctctacagtcaagctgttactgatgctgcttctctcagcagtgaagtta
agtttggttgggggaagagatatggtatctgttgaagacatggctaaaatatctaatatg
agtctacgtctgctaccaattctctgtaaccatattgctagtgctgaggattgcagactc
tcgctcactaatatggacttgatattgagaaatttcttgactcccaacacttggtttccc
ctcatacagaatcacctccagcttcagcatgttattctgaaacttcaagataggaagtct
ctcgagtctgtgcctattataatgaagttctttttgactcttgctcgtgtgaggcagggt
gcagagatgcttataaatcacggatttctatcgtctctgagattcttgtttactgaatac
ttggatgataggtctgcttcagtaacaatggcgaatagtctttccaactcatctgacata
atggaaaagcctaaacgaatatggggactgggttcagctgtcatcacagctatggttcag
tcactaggagacagttctgcttgttctgatgttgtggagaatgtaataccctacttcttt
tccgagaaagcatatatcatttcatactatctcagtgcaccggagttcccatctgatgat
catgacaagaaaagacttcgtgctcagcagagacaaacctcccttactgagcttaaagaa
actgagcacactctcatgctaatgtgtgtgctggcaaaacattggaatacatgggttaag
gccatgaaagaattggattcccagttgagagagaaaagcatccatcttttagcattcatc
agcaggggaactcaacgccttggagaaactgcaagttctagtgccccactcatatgtcct
cctatgcttaaagatgaattaaatagttgcaagaaaccctcgtttgtcaacagtagttgt
ggatggtttgctctttcaccacttggttgtgtttcaaaaccaaaagtgtcagctgcctca
atcacatcaatggcgctgactactaaaactcaagcaactgcaaatggatatcacatttcc
caatcgcacttctcagacattattgccctgcagatttacaaaaatacttttctcttattg
aagtttctctgtttacaagctgagtgtgcttctagaagggcagaggaggtgggatttgtt
gatcttgaccattttcctgagcttccaatgcctgagatcttgcatggcttacaggatcaa
gcaattgccatcattacagaagtgtgtgaagctaacagagtgaaggagattcaaatcgaa
gtccagtctatatgttgtttattgctacaaataatggagatggcgatgtacttggaactt
tgtgttcaccagatatgtggcataagaccagtgctagggcgtgtagaagatttttcgaag
gaagttaaactgttgataaaagcaacggagacgcatgctttcatgaaaccgtctctgaag
tccttgaagcagataatggtggttgtctatcccggattggtacaggcagaggactttttg
tga
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