Fragaria vesca (woodland strawberry): 101300553
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Entry
101300553 CDS
T02666
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fve03009
]
101300553
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
101300553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
RYDR_ITPR
NLBH
Motif
Other DBs
NCBI-GeneID:
101300553
NCBI-ProteinID:
XP_011466725
LinkDB
All DBs
Position
LG6:complement(11813435..11829946)
Genome browser
AA seq
2684 aa
AA seq
DB search
MATSSQAQAVKSLNNSAGRRRFVFKSISQRLEEVEIDVFRSLDKVKDEPSPGSTFFKDCL
VEWRELNTAEDFISFHEQMTPLVQTLPLILLHKETIFSELVSRLQISARLSVEPILRLIA
ALSRDLLEDFIPFLPRIVDSLVSLLQSGADREPEIVEQIFTSWSCIMRDLQKYLVHRLVD
MLEVTAKLRYYPKEYVQELMAQAMGFLLRTRTAPFGQLDKGVRKLMLDVVEESTPYRKYG
VGALLYHAMTGTSTRFHSRAKQVLLLLMDNSLIGSATVIEVLISALQRLCEDLDSKELNL
MFECLYQEIKGCMTNESVPRLSHLLSLLVSTVQVKNGKTVSDYKPMLEIVGLLVRTYIIA
SSVQMGEEHLSEVVDKIFQLMLCILSGLHTCSNFSMITGCSLQWAPVFDLSKSSLLGFIQ
QLLQKDIYIVNTFRISILRAMNVLIETSKEDVIFLLLTFCERLQRGVHNFTLQDGAPELS
RIQGFLSGTVSNWVGVLKGVENGDLSSTSIHEADLALLWGILNCFPLMVDSQEGLSLLFD
LIDAIDQLLRIEDDMHRTLPFTVSSLATRAGNIAGFPKHTWQSLIGTSLSSYYKFTCGNN
LEPETSRLLALGKRHKSCSHVLVAVADFLDSLYGSAMDVDSQFRICHPELSAYMATDALK
VFADNLCHSDRGIRASTLRILCHFETLSCDEPVLKKMNTELSPTSHVDNKDLNVLQLLLS
IESTPLSICTSRKVTLLISRIQMGLSAGRISEAYLPLVLNGMIGIFHNRFSHLWNPASEC
LAVLISQSKGHVWETFLNYFEQCQSIFQSSIVQVGQVDTMLSNKSSDLAERFNLFVTPTS
DSTPTATVLSSLLQSLQKTPILESKCHQILPLFLRYLGYNCENFVSVGSFNSNVCKGKEW
KHVLKEWLNLLKLMHNLKHSYQNQFLKEVLQNRLLDENDAEVQMKVLDCLLIWKDDFLLP
YSQQLKNLVSFHNLREELTRWSLSRESNLIEEQHRPYLVPIVIRLLIPNIRKLKKHASQK
HSRVNHRKAVLGFIAQLDVEELPLFFAMLIKPLHIISIGSEGAANWFWSSSNGSVEEFRR
LNFLKYFTFCNITALSWKKRSAFLHVIEDVLGVFDASHVGPFLDFLMGCVVRILGSSTIG
LDVAKGKGASSLKNYSDATLGSLGYDGAVDNNVVIPTAMGQLKDFRSLSLKIVSFVLNKY
EDHDFSCEFWDLFFGSVKPLIDGFKQEGFSGQKPSSLFSCFLAMSRSEKLVSLLCREQNL
VPDILSILSVKSASEAIVACVLNFVENLLILDDDLGVEDNAGKRVIRLYLEALVDNLHRL
FESNVAAKRKLLKHPGETEVRIFKILPKYINDELSARKFVDILLPVLANGAQDSEFRFEA
VQVICDIVPVLGSDVTNNILSAVSPLLTSTDLDKRFYICDLLDALARADPSIQFVAKLVQ
DLNATSLTDIDSLDYDRVLDAYDKITVDMFNTIREDHALVILSHCVYDMSSNESTLRHRA
YDALISFVQFSALILGKVVNNDSEMPDKMLASEDHCWTKGCIQRITSKFFLKHMANAMKS
GTTVRVEWVDLLREMVLKLPEVANLGSLKPLQDENLEIDFFKNIIHIQKHRRARAMKRFK
NAVTDSYMPEGITKKLFVPFFFTILMEEEKGEHIKNMCIEVLASISSREWSSSYSLLMRC
FNEINKNPLKQKLLLRLICSILHQFHFSETIDTGSVNEIQKCLHKSVLPKIQKLLSDSEK
VSVNISLAALRVLKLLPGDVMDSQLPSIIHRISNFLKNRLESIREEARSALADCLKELGL
EYLHFIVKVLRSTLKRGFELHVLGYTLNFILSKFLTTPISGKLDYCLEDLLSIAQNDILG
DVAEEKEVEKIASKMKETKKQKSFETLKLIAQSITFKSHALKLISPVITQFEKHLTPKTK
SKLESMLSHIAAGIECNPTVDQTDLFIFVHGLIEDGINEEKGKGESSFIMGGDGLRRKDV
VGKGNSSGRIAGAKSVCSYLISVFALGILQKCIKNMKVRKNDVQILSMLDPFVTLLGMCL
TSKYEDVLSATLRCLTSLVRFNLPAIEDQADNLKAVLFDIAHSWLKNGSSLMESCLRLLT
VLLRGNKITLSSEHLHLLIQLPVFVDIERDPSFVALSLLKAIVKRKLVVPEVYDLVTRVA
ELMVTSQVEPIHHKCSQILSHFLNDYPLSEKRLQQHLDFLLSNLRYEHASGRKTVLEMLH
AVIVKNPRSVVDEQSQTFFVHLVVCLANDRDNEVRLMAGEAIKRLTGCVSPRSLLSILEY
SLSWYLGEKQQLWGAAAQVLGLLVEVEVMKKRFHKHINNVLQVTKRILQSAIDAVTHDSP
HETAIPFWKEAFYSLVMLEKILNRFHDLCFDRDLEEIWEAICELLLHPHMWLRCISSRLV
AFYFASVKESCSGDNGNPFGTYYLIKPNKIFMIAVYLCCQLKSQLVDDAANKLITQNLAF
TVCGVHSLMGLTECADSHQFWYNLEHHEQDRFLKVFELLEARKGKTMFLSLTSGICDAND
ENPPKNILSLLVSNLLKKMGKIALQMEAIQMKIVFDCFGKILSEMSQEDCMLYAYEMLQP
LYKVCEGFSGTVIPENMKQLAEEVSGRLRSKLGSQNYAQVYNDIRKQLKAKRDKRKQDEK
RLAVVNPMQNAKRKLRIAEKHRANKKRKLMTMKMGRWVHQSKSK
NT seq
8055 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtcctcgcaagctcaggccgtcaagtccctcaacaactccgccggacgccgc
cgcttcgtcttcaagagcatctctcagagactagaagaagttgaaatcgatgtcttccga
agcctcgataaagtaaaggatgagccttcccctggctccacgtttttcaaagactgcctt
gtggaatggagggaattgaatacggcggaggatttcatctcgttccacgagcagatgacg
ccgttggtccaaacattgcctttgattttgttgcacaaagaaaccattttttcagagttg
gtttccagattgcaaatcagtgcaaggttatcggttgagccaattctgaggttgattgca
gctctgtcccgggatctcctggaggactttatccccttcttgccgaggattgttgactct
ctagtgtctctcttacaaagtggtgctgatagggagcctgaaatcgtcgagcagatattt
acatcctggtcatgcattatgagggacttgcagaaatatcttgtgcacaggcttgtagat
atgctagaggttactgcaaagttgagatattatccaaaggaatatgtccaagaacttatg
gcacaggctatgggattcttgctgagaacaagaactgcaccttttgggcagcttgataaa
ggtgtcagaaagctgatgcttgatgttgtagaggaatcaacaccttacagaaaatatgga
gtcggtgctttactatatcatgccatgacaggaacctcaacaagattccattctagagcc
aagcaagtgttacttttattgatggacaactcattaattggttctgccactgttattgaa
gtcttaatttctgccttacagagattgtgtgaggatttggactccaaggagttgaacttg
atgttcgaatgcttatatcaggaaataaagggctgtatgaccaatgaaagtgtaccacgt
ttaagccacctgttgtcactgcttgtctctactgttcaggtgaagaatggcaaaacggtt
tctgattacaagccaatgcttgaaattgtggggttgcttgtgcggacatatattatagcc
tctagcgttcagatgggagaggaacatttatctgaagttgttgataagatttttcagtta
atgctctgcatacttagcggactgcacacttgtagtaatttttctatgatcactggctgt
tcgttgcaatgggctcctgtatttgatttatcgaagtcgagcttattggggtttattcaa
cagctgctacaaaaggatatttatatagtaaataccttccgaattagcattttaagggcc
atgaatgttttaatagaaacctccaaagaagatgttatatttctgttactcacgttctgt
gaaagactgcaaaggggagtgcacaactttacgttacaagatggagcacctgaactgtca
aggatccaaggttttctgagtggcacagtcagtaattgggttggggttttaaagggtgtc
gagaatggggatttatcatccacttcaattcatgaagctgatttggccctgctgtgggga
atccttaactgctttccactaatggtagattcccaagaaggtctatccttgttatttgat
ctgatagatgcaatcgatcagctcctgaggattgaagatgatatgcatcggaccttgccc
ttcacagttagttcacttgctactcgtgcagggaatattgcgggttttcctaaacacact
tggcaaagcctaattggtacttccttaagttcctattacaaattcacctgtggcaataat
ttggagccagaaacaagcagactgttagctcttggaaaaagacacaaatcatgttcccat
gtgttggttgctgttgctgattttttggactctttgtatgggtctgcgatggatgtcgat
tcccagtttagaatttgtcatccagaacttagtgcatatatggctacagatgctttaaag
gtgtttgctgacaatttgtgccactcagacagagggattcgtgcttccactcttagaata
ttatgccactttgaaacattaagctgcgatgagccagttctgaaaaagatgaacactgaa
ctttctcctacttctcatgtagataacaaagacttaaatgttcttcagctccttctctca
atcgagtcaactcctctttcaatttgcaccagcagaaaagttactctactgatttctaga
atacagatgggcctctctgctggaagaatatctgaagcttatcttccccttgttttaaat
gggatgattggtatcttccataaccggtttagtcatctttggaatcctgcatcagagtgc
cttgcagttctgataagccaaagtaaaggacatgtatgggaaacttttctcaactatttt
gagcaatgccagtcaatatttcaatcatctattgttcaagttggccaagttgatactatg
ctgtccaacaagtcaagtgatctggctgagcgctttaatttgtttgttactccaacatct
gatagtacaccaactgcaacagtattatcttccttgctccagtctttacaaaaaactcca
atccttgaatccaagtgtcatcagattctacctttatttctgagatatttgggctataat
tgtgaaaactttgtaagtgtggggtctttcaattcaaatgtttgtaaaggtaaagagtgg
aaacatgtccttaaagaatggttaaacttgctgaaactgatgcacaaccttaagcactca
tatcagaatcaatttcttaaagaggttttgcaaaataggctcttggatgaaaatgatgct
gaagtacagatgaaggttcttgattgcctcttaatctggaaagatgatttcctgctcccg
tatagtcagcagttgaaaaacctggtcagcttccataatttgagagaagaattaacaaga
tggagtttatccagggagtctaatctaattgaagaacaacacagaccttaccttgtgccc
attgttatccgtcttctgattcccaacatccggaaattgaagaaacatgcttcccagaag
cactctagagtaaatcatcgcaaggcagtactcggttttatagcccaacttgatgttgaa
gagctacctcttttctttgcaatgttgataaagccattgcacattatttcaataggaagt
gaaggtgctgcaaactggttttggagctcatcaaatggttctgtggaagaattccgaaga
ttgaatttcttgaagtatttcacgttttgcaatattacagccttgtcttggaagaaaaga
agtgcttttctgcatgtgattgaagatgttcttggtgtttttgatgcatcacatgttggt
ccatttcttgattttctaatgggatgtgttgttcggatactaggaagcagtactataggt
cttgatgtggcaaaaggcaaaggagcttcttcccttaaaaattattctgatgctactctt
ggttcacttggatatgacggtgcagtggataataatgttgtgatacctacggctatgggg
cagttgaaggatttcagatctctctccttgaaaattgtgtcctttgttctcaataagtat
gaagatcatgactttagctgcgaattctgggaccttttctttgggtcggtgaagccttta
attgatggtttcaagcaggagggattcagtggccagaagcctagttcactcttctcttgc
tttcttgctatgtctagaagcgaaaaactggtatcactgctgtgtagggagcaaaacctc
gtccctgatattctctcaattctatccgtcaagtcagcatctgaagctattgtagcttgt
gttctgaactttgttgagaacttgttgattctggatgatgacttgggtgttgaagacaat
gccgggaaaagagttatacgtctgtaccttgaagcactagttgataatttgcatcgtctc
tttgaaagtaatgttgcagccaagaggaaattgcttaaacacccaggggagacagaagtg
aggattttcaaaatattaccaaagtatataaatgatgaattgtctgcccggaaattcgtt
gatatattgctccctgttttagcaaatggagctcaagattcagaatttcgatttgaagcg
gtgcaagtcatatgtgatattgttccagtactagggagtgacgttacgaataatattttg
agtgcagtatctccattacttacttctactgatctagataagcggttttatatctgtgat
cttcttgacgctcttgccagagctgacccttccattcaatttgtggcaaaacttgtccag
gacttgaatgcaacctctctcacggatatagatagcctcgattatgatagagtgctcgat
gcttatgacaagatcacggttgatatgttcaatactattcgagaggatcatgcattagtc
atattgtctcactgtgtctatgacatgtcatctaacgaatcaaccttgaggcacagagct
tatgatgcattgatttcatttgttcaattttctgccctcatacttggcaaagtggtgaac
aatgactccgaaatgcctgacaagatgttagcctctgaggatcattgctggacaaaaggt
tgcattcagcgcataacaagcaaatttttcttgaagcatatggctaatgctatgaagagt
gggacgactgttagagtggaatgggtcgacttacttagagaaatggtgttaaaacttcca
gaagtggcaaaccttggttcactgaaacctctacaggatgaaaatcttgaaatagatttc
ttcaaaaatattattcacatacagaaacataggagagcaagggcaatgaaacgctttaag
aatgctgtcactgacagctatatgccagagggcatcacaaagaaactgtttgttcccttc
tttttcacgatcttgatggaggaagaaaaaggagagcatataaaaaatatgtgcatagag
gtgcttgcttcaatttcaagcagggagtggagttcatcttactcgttgctgatgagatgc
ttcaatgagattaacaaaaatcctctgaaacagaaacttcttttgcgactaatttgctct
atcttgcaccagttccacttttcagagaccattgatactggttctgtaaatgaaatacaa
aaatgccttcataaatctgtgcttcctaagattcaaaaattactcagcgattctgaaaag
gtcagtgttaacatcagtcttgctgcattgagagtactaaagttgctacctggagatgta
atggactcgcagcttcctagcattattcatcgcatttcaaactttttgaagaatagatta
gaaagcatccgtgaggaagctaggagcgctttggctgactgtttgaaagagcttgggttg
gaatacttgcattttatagtcaaggttttgcgaagtactttaaaacgtggattcgagttg
catgtcttggggtatactctaaactttatcttatcgaagtttctcactactcctatcagt
gggaaactggactactgtttagaagatctgctatctattgcacagaatgatattcttgga
gatgttgccgaggaaaaagaggttgagaagattgcttccaaaatgaaagaaacaaagaag
caaaagtcttttgaaactctgaaattgattgctcaaagtataacattcaaaagccacgcc
ttgaagcttatatcaccagttataactcaatttgagaaacatctgacgccaaaaacaaag
tcaaaactggaaagtatgctgagtcacatagcagctggtatcgagtgtaatccaactgtt
gatcagactgatctttttatatttgtacatggcctgattgaagatggaataaatgaagaa
aagggtaagggtgagagttcgttcattatgggaggagatggacttcgtcgaaaggatgtg
gttgggaaaggtaattcctctggccgtattgcaggtgcaaaatcagtgtgttcatatctt
atttctgtgtttgctcttgggatattgcagaaatgcataaagaatatgaaagtgagaaaa
aatgatgtacaaatactgtcaatgttggatcctttcgtcacactgttggggatgtgcttg
acttccaagtatgaagatgtcttatctgcaacgcttagatgcttaacttcactggtcagg
tttaatttacctgctattgaagatcaagcagacaatttaaaagcagtgctatttgatatt
gctcatagttggttgaaaaatggcagttccctaatggagtcgtgtctgaggttattaact
gtacttttgcgggggaacaaaattactctttcctctgaacatcttcatctattaattcag
cttccggtgtttgttgatatcgaaagggacccttcgtttgttgctctttcacttctgaag
gcaatagttaagcgtaagcttgttgttccagaggtgtatgatcttgttactagagttgca
gaattgatggtaacaagtcaagttgaaccaattcatcacaagtgtagtcagattctatct
cacttcttaaatgattatcctctttcagaaaagaggttgcaacaacatttagattttttg
ctgtctaatctgaggtatgagcacgctagtggaagaaaaactgtgcttgaaatgctccat
gcagttatagttaaaaatccacgaagtgttgtagatgagcaatcacagacgttttttgtt
catttggtggtttgcttggctaatgatcgggataatgaagttcgtctaatggctggtgag
gctataaaacgtctcactggctgtgtaagcccacgctcacttctctccattcttgagtac
agtctttcttggtatttgggtgaaaagcagcaactgtggggtgcagcagcacaggttttg
gggctgctggttgaagtagaagtcatgaagaaacgatttcacaagcatatcaacaatgta
ttacaagtgactaaaaggatcttgcagtccgccatcgatgctgtcactcatgattctcct
catgaaactgccattcctttctggaaagaggcattttattcattggttatgctggaaaaa
attctgaatcgatttcatgatctttgttttgatagggatcttgaggagatatgggaagca
atttgtgagttactcctgcatccacacatgtggttacgttgcatttcaagtcgtcttgta
gccttctactttgcttctgtcaaagagtcttgctcaggagataatggaaatccatttggc
acttactaccttataaaacccaataaaattttcatgatagctgtgtatctctgctgccaa
ctgaagtcgcaactagttgatgatgcagccaataaactgattacacaaaatcttgcattc
actgtgtgtggtgtgcattctttgatgggtctaacagagtgtgcagattctcaccagttt
tggtataaccttgaacaccatgagcaagaccgatttcttaaagtttttgagttgctcgaa
gctagaaaaggaaagaccatgtttttatctcttacctctggcatttgtgacgcaaatgat
gaaaatccccccaagaatattctaagcttgctcgtctctaacttgctcaagaaaatggga
aagattgcccttcaaatggaggctatccagatgaaaattgtcttcgattgtttcggaaag
atcttatctgaaatgagtcaggaagattgcatgctttatgcttatgaaatgttgcagcca
ttgtataaagtttgcgaaggattttctgggactgtgatccctgaaaatatgaagcaatta
gcagaagaagtttctggacgtctacgaagtaaactaggcagccagaattatgcacaagtt
tacaatgacatcaggaaacaactcaaggcaaaacgggacaagaggaaacaggatgaaaag
cgcttggctgttgttaatcctatgcagaatgccaagaggaaactgaggattgcagagaag
catcgggccaacaagaaaaggaagctgatgacaatgaaaatggggagatgggtacatcag
tccaagtcaaagtga
DBGET
integrated database retrieval system
