Fragaria vesca (woodland strawberry): 101300822
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Entry
101300822 CDS
T02666
Name
(RefSeq) NF-X1-type zinc finger protein NFXL1
KO
K12236
transcriptional repressor NF-X1
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
fve03000
]
101300822
04121 Ubiquitin system [BR:
fve04121
]
101300822
Transcription factors [BR:
fve03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
101300822
Ubiquitin system [BR:
fve04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
NFX1 proteins
101300822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
K_trans
RRM_NFXL1
K_trans_C
zf-NF-X1
R3H
NCBP3
RNA_bind
Motif
Other DBs
NCBI-GeneID:
101300822
NCBI-ProteinID:
XP_011464477
LinkDB
All DBs
Position
LG5:complement(9890622..9898480)
Genome browser
AA seq
2025 aa
AA seq
DB search
MASQVRGERRDNNRSRNPSQPRWVPRGSNPTAAAVNPPPPGFSLNLQNGNANGPAAGESR
QHRGGHGGNGGQPNHVSAPGESRQHRGGYNGNGGQLNQVSGPSESRQQRGGHNGNGGQSN
YSFTPSDGRQHRGGHNGIVGQFNHSSVPSESRQHRGGHNGNGGQSNQSSTLSENREHRGG
HHGYRGNVVRPVNHRREREKSESQEGMGMKDSSLPQLVQEIQDKLTKGTVECMICYDMVR
RSAPVWSCSSCYSIFHLNCIKKWARAPTSIDMSAGKNQGFNWRCPGCQSVQLTSSKEIRY
VCFCGKRTDPPSDLYLTPHSCGEHCGKPLEKEVAGRGISKDDLCPHMCVLQCHPGPCPPC
KAFAPPRLCPCGKKTITTRCSDRTSVLTCGNQCSKLLDCGRHRCERKCHVGPCDPCQVPF
NASCFCLKKVEVVLCEEMTVKGEVKAEDGVFSCSSSCCKKLSCGNHVCSEICHPGPCGEC
NLMPQNVKTCHCGKTSLQEERQSCLDPIPTCSQICEKTLPCGVHQCQQICHTGDCPPCLV
KVTQKCRCESTSRNVECCNTTMENQKFTCDKPCGRKKNCGRHRCSERCCPLSNSNNRLSG
DWDPHLCSMPCGKKLRCGQHSCESLCHSGHCPPCLDTIFTDLTCACGRTSIPPPLPCGTP
PPSCQLPCSVPQPCGHSSSHSCHFGDCPPCSVPVPKECIGGHVVLRNIPCGSKDIKCNKS
CGKIRQCGMHACGRTCHPPPCESSSSAEVGSKSSCGQICGAPRRDCRHTCTAPCHPYASC
PDARCDFLVTITCSCGRITANVPCDSGGSNASFNAGTVFEASIIQKLPVPLQPVEATNKK
VPLGQRKLMCDDECAKLERKRVLADAFDIVPPNLDALHFGETNVTSELLSDLFRRDPKWV
LSVEERCKQLVLGKSKGATSGLRVHVFCPMLKEKRDVVRVIADRWKLAVQAAGWEPKRFI
VVHATPKSKVPARVLGVKGTTTVNTSQPPAFDHLVDMDPRLVVSFPDLPRDADISALVLR
FGGECELVWLNDKNALAVFNDPARAATAMRRLDNGTLYHGAIAVLSVASSGSNAWGGVGI
AKEGAYTALKGNAWKKAVIRESSWREDSWGDEELSGGSADVQASVWKKEAPIAASLNRWS
VLDSEVPLGSSSVSPTVEDSGKHTSAGVSPTVEDSGKHTTAGLISMVESNASGSTPSNAS
SSTSMGQLGGSIAETSEVVDDWEKAYEXDNVGCSLGSFYNQLELIIVYNMQETWKYTLLL
SFQSLGVLYGQMSTAPLYVFGTIHAKDIKSEDTVYELFSFIFWTMSIISFLKYACIVLRA
DDNGEGGTFALYSLLCRHAKVGLLPNDKSSNEVMHYEREIPFWIKVESRAKRAIEKHKSS
HYVMLVLALLGSCMTIGIGVLTPALSVYSASTGVQRSLSDMAKKFSSSENKQDSLAKAFK
DYVPVPLASAILVCLFTLQHYGTRKIGFMFAPIIIIWLICIGGVGIYNIFYWDRKIIHAI
SPVYMYRFVRNINVGRWRALGSIVLCVAGSEAMYADLGHFRKKSIKITFVCLIYPVLVLC
YAGQAAFISKNFHDDDYNHLSVSVPLSVRHWFTALSLLASAVGSQATITASFSIINQCLA
LGCFPRVKVIHTSDKIHGQVYIPDINWILMVLCLTVTIGFHNIEKIGNATGLAVISAMVV
TTCLMSLVIALYWEKSLFESICFLLFFGFIEAMYVSACILNFHKGAWYLVFLLALSLTIM
LSWHYGTKKKLEFDLTNKVSAEWLVAISPALGVTRVPGIGFIYTDIVSGIPAFFSHFITN
LPAFHQVLIFVSFKSLPVPYVPATRRYLVGRIGPKDLKIYRCVVRYGYCDHIRDTDDFEE
EIIGSIGEFISVEENDFDNSFQDRMIIVGKPPSNGSALIPLSEITSCEDSVSLVHSESRL
GTLADACESGLVSMQRKKVRFMLPPNSPKMRVSVREELQELIDARESGAAYFLGQVHLAV
RDGSNIFKRLLIMTYVLSEKNCREPPVALNIPHAALVEVGMVCSI
NT seq
6078 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcaggtccggggtgagcgtagggataacaacaggtccaggaatccttctcag
cctcgttgggtgccgagaggctccaaccctaccgccgctgccgtgaacccgcctcctccg
ggattcagtttgaacttacagaatgggaatgccaacggccctgcggcaggagagagtcgg
cagcatagaggaggacatggtggaaatggaggacagcccaatcatgtttcggcaccagga
gagagtcggcagcatagaggagggtataatggaaatggtgggcagcttaaccaggtgtcg
ggaccatcagagagtcggcagcaaagaggggggcataatggaaatggagggcagtctaat
tacagcttcacaccgtcagatggtcggcagcatagaggaggacataatggaattgttggg
cagttcaatcacagctctgtgccatcagagagtcggcagcacagaggaggacacaatggg
aatggagggcagtctaatcaaagctccacattatcggagaatcgggagcacagaggagga
catcatggttacaggggtaatgtggttcggccggtgaatcatagaagggagagggaaaag
agtgagagtcaggaggggatgggaatgaaggactctagtttgccgcagcttgtgcaagag
attcaggataaactgactaagggtactgttgagtgcatgatttgttatgatatggtgagg
aggtctgcacctgtatggtcgtgctcaagctgttactcgattttccatctgaattgcatc
aagaaatgggctcgagctcctacctctattgatatgtctgcagggaagaatcagggtttt
aattggcggtgtccaggatgtcagtctgtacagctcacatcgtcaaaggagattcgctat
gtgtgtttttgcggtaagcggacagacccaccttcggatttgtatttgacaccacattca
tgtggagaacattgtgggaagccactggagaaggaggttgcaggaagaggaataagtaag
gatgatctttgccctcatatgtgtgtcttgcagtgccacccgggtccatgccctccttgt
aaagcatttgcaccgccgaggttatgcccttgtggaaagaaaacaataacaacaagatgc
tcagatcggacttctgttctgacatgtggcaatcaatgtagtaagcttcttgattgtggg
cgtcaccgctgtgagcggaagtgccatgtgggtccttgtgatccttgtcaggtgccattc
aatgcttcttgcttttgcctgaaaaaggtggaggttgttctatgtgaagagatgacagta
aagggagaggtaaaagcagaggatggtgttttttcttgcagttctagttgttgtaagaag
cttagctgtggcaatcatgtttgcagcgaaatttgtcatccaggcccttgtggagagtgc
aatttaatgccacagaatgttaagacatgccattgtgggaaaacaagcttgcaggaggaa
cgccagagttgtttggatccgattccaacttgctcacaaatatgtgagaagactctccct
tgtggggtgcaccagtgtcaacagatatgccatactggtgattgccccccttgtttggta
aaagttacccaaaagtgccgctgtgaatcaacttctcggaatgtggaatgctgtaataca
acgatggagaatcagaaatttacctgtgataagccttgtggacggaagaagaattgtgga
aggcaccgttgtagtgaaaggtgctgtcctctttctaattcaaataatcgactctcaggg
gattgggatcctcacttgtgctctatgccctgtgggaagaaattaaggtgcgggcagcat
tcttgtgaatctctgtgtcacagtggccactgtcctccctgccttgatacaatcttcact
gacttgacatgtgcatgtgggagaacttcaatccctcctccattgccctgtggtacacct
cctccatcatgtcagcttccttgttcggtgcctcagccttgcggacattcatcttctcac
agctgccactttggagactgcccaccttgttcagtgcctgtgccaaaggagtgcattggt
ggtcatgtggttctcaggaacattccttgtgggtcgaaggacattaaatgtaacaagtcc
tgtgggaagataaggcaatgtggtatgcatgcttgtggtagaacatgtcacccaccgcct
tgcgagtcttcctcgtcagcggaagtcggctcaaaatcttcttgtggacagatatgtggt
gctcctaggagggattgcaggcacacatgtactgcaccttgtcacccttatgcttcctgt
ccggacgccagatgtgatttccttgtgacaatcacgtgttcttgtggccggataacagca
aatgttccttgcgattctggtggcagcaatgctagttttaatgctggcactgtctttgaa
gcttccattattcaaaagttgccagtaccactgcaaccagtagaagccaccaacaagaag
gtcccacttggacagaggaagctcatgtgtgatgatgaatgtgccaagttggagcggaaa
cgtgttcttgcagatgcttttgatatagttcctccaaatttggatgcactccattttggt
gagactaatgttacttctgagttgctttcggacctttttaggcgtgatccaaagtgggtt
ttatcggtggaggagagatgcaaacagttggtgcttggaaagagcaaaggtgctacaagt
ggcctccgggtccatgtcttttgtccaatgctgaaggaaaagagagatgtggttagggtg
attgctgacaggtggaagcttgctgttcaagctgctggctgggagcccaagcgttttatt
gtggttcatgctactcctaaatccaaagtcccagccagggtgcttggggttaagggtacc
accacagtaaacacatcccagcctccagcttttgatcatttagttgacatggatcccagg
cttgtagtttctttcccagatcttcccagggatgcagatataagtgcattggttttgagg
tttggtggtgaatgtgagcttgtctggttgaatgacaagaacgcattggctgtatttaat
gatcctgctcgagccgcaactgcaatgaggaggttggataatggtacactctatcatggg
gctattgctgttttgtctgtggcttcatctggttctaatgcgtggggtggagtgggaata
gccaaggaaggagcctatacagcactgaagggtaatgcgtggaagaaggctgttattcgg
gagtcctcttggagagaagattcatggggtgatgaagagttgtcaggtggttctgcagat
gtccaggcatctgtgtggaaaaaggaagctccaattgctgcctcattaaaccgctggagt
gtacttgatagtgaagtgcctttgggatcatcttctgtatcgcccacagtagaggactct
ggaaagcatacttctgctggtgtatctcccacagtagaggactctggaaagcataccact
gctggtttaatttctatggtggaatcaaatgctagtggttcaactccatcaaatgcaagc
agttcgacttccatggggcagcttggaggttctattgcagaaacatctgaagtggtagat
gactgggagaaggcttatgaataagataatgttggctgctccctggggagtttttataat
cagcttgagcttatcatcgtgtataatatgcaggagacatggaagtatacacttcttttg
tcatttcagagccttggagtgttatatggtcaaatgagtactgcgcccttatatgtcttt
gggacaattcatgcaaaagatatcaaatcggaggatacagtttatgaactattctccttc
attttctggactatgagcatcatttcttttctgaagtacgcctgtatagtattacgagct
gatgataatggagaaggtggtactttcgctctgtactcactcttgtgtagacatgccaaa
gtgggtttgcttccaaatgacaaaagttccaatgaggttatgcattatgagagggaaata
cctttctggattaaggtggaatcgagggctaaaagagccattgaaaaacataagagtagt
cactatgtcatgttggtcctggctctgttaggttcctgcatgacaatcggcattggggtg
cttaccccagctctttcggtctattcagcttcaacaggtgttcaaagatcactgtcagat
atggccaaaaaattttcatcttcggaaaataaacaagattcactagcaaaagcttttaaa
gattatgtaccagttcctttggcatctgctatattggtgtgcctcttcacgctccagcat
tacgggacacgtaaaattgggtttatgtttgctccgattatcattatttggctgatatgt
attggtggagtgggtatatataatattttctactgggacagaaaaattatccatgcaatc
tctccagtatacatgtacagatttgttaggaacattaacgttggccgttggagagcatta
ggcagcatagttctatgtgtagcagggtcagaggccatgtacgcagatctaggtcacttc
agaaagaaatccatcaagattacatttgtatgcctcatctatcctgttcttgttctatgc
tatgccggtcaggctgcatttatctccaaaaactttcatgatgatgattacaatcatctc
agtgtgtcagttcctttatcagttcgacactggttcactgcattatccctacttgcttca
gctgtcggaagtcaagccaccataacggccagtttctccatcataaatcagtgcctggca
cttggttgttttcccagagtaaaagttattcatacatcagataagatacacgggcaggtt
tatattcccgatatcaactggatactgatggttctatgccttactgttacaattggtttc
cataatattgagaaaattggcaatgcaacaggtttggccgtaatttctgcaatggttgta
acaacttgtctcatgtcactggtgattgccttatactgggagaagagtttgtttgaatct
atctgttttctactattcttcggcttcattgaggcgatgtatgtgtcagcttgtattttg
aatttccacaaaggagcttggtatttagttttcctattggcattgtccttgactatcatg
ctttcatggcattacggaaccaagaagaagcttgaattcgatttaacaaacaaggtgtct
gcagaatggcttgtagctattagcccagcactaggagttaccagggtacctggcattggt
ttcatttatactgatatagtctcaggaattccagctttcttctcacactttattacgaat
cttcctgcatttcatcaagttttgatctttgtgtccttcaagtctctaccagttccctat
gtccctgcaactcggaggtaccttgtgggaaggatcgggccaaaagatcttaaaatatat
cgttgtgtggtgagatatggatattgtgatcacattagagacactgatgattttgaggaa
gagattattggttcgattggagaattcatttccgtggaagaaaatgactttgacaattca
tttcaagatagaatgatcatagttggcaagccaccatcaaatggaagtgctttgattcct
ttaagtgagattacctcatgtgaggactcagtgagcttggtgcacagtgaaagccggcta
ggtacattggctgatgcatgtgagagtggtttggtttcgatgcagagaaaaaaagtccgc
ttcatgctgcctccgaatagtcctaagatgcgagtatctgttagggaggagcttcaagaa
ctgattgatgctagggagagtggtgctgcatatttcttgggtcaggtgcatttggcagtt
cgtgacggctcaaacattttcaagcggttactgatcatgacttacgttttgagtgagaaa
aactgcagagagcctcccgttgcactcaacattcctcatgctgctcttgttgaggttggt
atggtctgtagcatataa
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