Fragaria vesca (woodland strawberry): 101301748
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Entry
101301748 CDS
T02666
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101301748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101301748
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101301748
Spliceosome [BR:
fve03041
]
Complex C
Other components
Step II factors
101301748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
cobW
AAA_16
ABC_tran
AAA_30
AAA_23
nSTAND3
MMR_HSR1
Helicase_RecD
AAA_14
SLFN-g3_helicase
nSTAND1
Sigma54_activ_2
AAA_29
ATPase_2
T2SSE
FtsK_SpoIIIE
NPHP3_N
AAA_33
DAP3
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
101301748
NCBI-ProteinID:
XP_004310054
LinkDB
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Position
Un
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AA seq
698 aa
AA seq
DB search
MAELPILQFEEKIIETVQNSPVVVIIGETGSGKSTQLSQMLHRRGYTNSGIVGVTQPRRV
AAVSVARRVSQELNVRLGDEVGYAIRFEDRTSDRTRIKYLTDGVLLRESLSNPELDQYSV
IILDEAHERSLNTDILLGLMKRLVKRRASNLKVIVTSATLDGDKVSQFFSNCPVLNVPGK
LYPVEILYSNERPKSYLEASLKTALDIHIKEPEGDVLIFMTGQDDIEKLVSKLEDRVRSL
EEGSVLDAIILPLHGSLQPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSIDYHEELLDATVPE
IQRSSLAGSVLYLKSLDLPDIDILKFDFLDSPSSESLQDALKQLYLIDAIDEDGLITRVG
KTMAELPLEPSLSRTLMEANDNGCLSQALTVAAMLSAETTLLPGRSKSTEKKRKHDHLDL
PDGSGWGDHIQLLQIYECWHQTHYNIDWCKDRGLQVRGMTFVKDVRKQLCQIMQKVAKGS
LDVQTSRRGKETQQDYNNLRKALCVGYANQLAERMVFHNGYRTLGFKPQVVQVHPSSVLK
PDDEGKFPNYVVYQELIATTRPYLRTVCAVNVSWVAPILNKVNNLNINKLSGGIDSIEEH
AEGNLASLPKKDVTAVPDDQESKIQAARERFLARKGKK
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctcccaatcctccagttcgaagagaaaatcatcgaaacagtacaaaacagc
cccgtcgtggtcataatcggcgagaccggttccggtaagagcacgcagctctctcagatg
ctccaccgcagaggctacaccaactccggcatcgtcggcgtcactcagccccgccgtgtc
gccgccgtctccgtcgccagacgagtttcgcaggagctcaatgtccggctcggcgacgaa
gtcggatacgccatcagattcgaagatagaacttccgataggactcggatcaagtacttg
actgacggagttctcctccgtgaaagcttatccaacccggagctcgatcagtactctgtg
attatactcgacgaggctcacgagagaagtctcaacacggacatattgctgggactgatg
aagcggttggtgaagcgtcgcgcttcgaatttgaaggttattgttacttctgcaactctt
gatggtgataaagtgtcacagttcttttcgaattgccctgtgctgaatgtgcccgggaag
ctttaccctgtggagatattgtacagcaatgagcgtcctaagagctatcttgaggcttcg
ttaaagacagctctcgatatacatataaaggaacctgaaggtgatgtcttgatattcatg
actgggcaggatgacatagagaagttggtctctaagttagaagatagagttagaagcctg
gaggaaggatctgtcttggatgccataatccttcctcttcacggttctctgcagcctgaa
atgcaggtacgtgtatttagtcccccacctcctaattgtaggagatttattgttgccaca
aacattgctgaaacttctttgactgttgatggcgttgtgtatgttattgattctggttat
gttaagcaacggcagtacaacccctcaactggcatgtactccctcgatgttgttcaaatt
agcaaggtacaggccaatcaacgagcaggacgagctgggaggacacgtcctgggaaatgc
tatcgattatatccttccatcgattaccatgaggagctcctcgatgcaacagttcctgaa
attcaacgttcttcacttgctggaagtgttctttatttgaaatctttggacctccctgac
attgacattctcaaattcgattttcttgattctccttcctctgaatctttacaagatgct
ctgaagcagttgtatcttattgacgctattgatgaagatggattgatcacgagagttggg
aagacaatggctgaacttccactagaaccttcactgtcaagaaccttgatggaggcaaac
gataatggttgcttgtcccaggctttgactgttgctgctatgttatctgcagaaactaca
ttgcttcctggtcgaagcaagagtactgagaagaaaaggaaacatgatcatttggacctt
cctgatggttctggttggggtgatcatatccagttgctacagatctatgagtgctggcat
caaactcactataacattgattggtgcaaagaccgtggcttgcaggtaagagggatgaca
tttgtcaaggatgtaaggaaacagctgtgtcaaatcatgcaaaaagtggcaaagggatca
ttagatgtacagacaagcagaagagggaaagaaacccaacaggattataataacttgagg
aaggctttgtgtgtggggtatgcaaatcagcttgctgagagaatggtatttcacaatggc
tatcgaaccttaggttttaagccccaagtagtacaggtgcatccatcctctgtgctaaaa
ccagatgatgaagggaaatttccaaattatgtcgtgtaccaggaacttattgcgactact
cgtccatacttgcgcactgtatgtgctgtaaatgtttcatgggttgcacccattttgaac
aaggttaataacctaaacatcaacaagctgagcggtgggattgatagtatcgaagagcat
gcagagggaaatcttgctagtttgccaaagaaagatgttacagcagttcctgatgatcaa
gaaagtaaaatacaagcggctagagaacgatttcttgctcgtaaaggaaagaaatga
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