Fragaria vesca (woodland strawberry): 101301950
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Entry
101301950 CDS
T02666
Name
(RefSeq) putative ATP-dependent RNA helicase PB1A10.06c
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fve03009
]
101301950
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101301950
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
90S particles
Helicases
101301950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHX37_C
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
nSTAND3
AAA_16
ATPase
AAA_19
AAA_23
Motif
Other DBs
NCBI-GeneID:
101301950
NCBI-ProteinID:
XP_004294749
LinkDB
All DBs
Position
LG3:complement(20812871..20820893)
Genome browser
AA seq
1320 aa
AA seq
DB search
MGKQKGDGAGSKARPSSSSSGDSNAFILPNKRNRKRKGTTQEGKILGTRKSQKLTKSQEK
KLHKLEEDKEKALLLSKSIEALGKYKLPEGVHSLLQSSKDIGQVESKKERRRKAVLFSKA
RLEVPYTDQPFKKKVDVDACSESEPESERTRSRQDLDKSGQVQSMVIQKEIHKTASVCLN
SSQGIVSSRGHVTDGGPAASSSSKIVICKEHDVSLPEYVTPNENDDHERTESMDRVKGSP
KVTSSRTSEVSDFAEPRSLIAPTIVNVSRPVEVENTRKDLPIVMMEQEIMEAVNDHSTVI
ICGETGCGKTTQVPQFLFEAGYGSSHSCHRSGIIGVTQPRRVAVLATAKRVAYELGLHLG
KEVGFQVRFDKKIGESSSIKFMTDGILLRELQSDFLLMRYSVIILDEAHERSLSTDILIG
MLSRVISTRQEIYAKQLLSGKSIDPRQQVFPLKLVLMSATMRVEDFISGRKLFREIPPVI
EVPTRQFPVTTHFSKKTGTDYIDQAYKKVLAIHKRLPRGGILVFVTGQREVESLCRKLRR
ASAELVMKTSGRKIEYNTHDASKINVELLDMNEINEAFEVDENSADRQVDRFSSIDEDRG
NITEDELDASYDSETETESEVEIDDDGDLLLHDTTEIDGVGADVLGETGSIASLKAAFEV
LASKTSDGKQPSSVTLDACCNKFRPILGKKSEIDIHNSPGGLHVLPLYAMLPAASQLRVF
EEVKEGDRLVVVATNVAETSLTIPGIKYVVDTGRVKVKNYNSSNGMETYNIEWISKASAA
QRKGRAGRTGPGHCYRLYSSAVYNNEFPDFSPAEILKVPIDGVVLLMKSMNIEKVSNFPF
PTPPDVAALGEAERCLKALEALDSNGRLTPVGKAMARYPMSPRHSRMLLTVIQIMYEEKS
YPRSKLVLAYAVAAAAALSLSNPFVRQFENDSKTHDLDQDENPGAPVNKMVSEMQEKLRR
KKLKETIKVFREKFSNPISDALTVAYALQCYELSRSPVKFCNDNALHPKTMEEMSKLRKQ
LLQLVFNQCGASGNEKGFSCIFGNLEEVEHVWRVSHDKSPLSLYEEDLLGQAICAGWADR
VAKRIKGTSGSSEVDRKVHAVRYQACMVEETVFLHRWSAVSNAAPEFLVYTELIQTRRPY
MHGVTSVKPEWLVKYAPSLCTFSATSTDAKQYYEPVTDRVLHDVIPAFGPRLWKLPPHSL
PITNYVSRVTIFAYALLEGQVLPCLKHAREFMKAPPASILRPEAQGQRRVGNLLAKLNTK
KIDSCSMLREVWKENPDELRSEIQDWFKESFHKNLATLWSVMLREVVLELGERFSKRQKR
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggggaagcagaagggagacggagctgggagcaaggcccgcccttccagtagcagctct
ggtgatagcaatgcatttatcttgccaaataagagaaacaggaaaaggaagggcaccact
caggagggtaagatacttggcacaagaaaatcacagaagctgaccaaatcccaagaaaag
aagttgcacaagttggaggaggataaggaaaaagcccttttgctatccaagagcattgag
gctttagggaagtataagcttccggagggtgtacattctcttttgcagtcatcaaaagat
attggtcaggttgaatcaaaaaaggaaagacgtaggaaggctgttctattctctaaagca
agattagaagttccgtatactgaccaaccatttaaaaagaaagtcgatgtcgatgcttgt
agtgaaagtgaacctgagtcagaaagaactcgatcaaggcaggatcttgacaaaagtggt
caagtgcaatcgatggtaatacaaaaagaaatccataagaccgcatctgtatgtttgaac
tcctcgcaggggatagtctctagcagaggacatgtcacagatggtggtcctgctgccagc
tcatcatctaaaattgttatctgcaaggaacatgatgtgtctttgccagaatacgtaact
cccaatgagaatgatgaccatgaaagaacagagtcaatggatagggtaaaagggagccca
aaagtaacttcaagccggacaagtgaagtttcagattttgctgagccacggtctcttatt
gctccaactatagtgaatgtatcaaggcccgttgaagttgaaaacacaaggaaggatctt
ccaatagtaatgatggaacaggagataatggaggctgttaatgaccattctactgttatt
atatgtggagagacagggtgtggtaaaaccactcaggttccccagtttctttttgaagct
ggctatggttcaagccactcttgtcatcgaagcgggataattggtgtcactcaacctcgt
cgtgttgcagtccttgcaactgctaagcgagttgcatatgagcttggtctacatttgggt
aaagaggttggctttcaagttagatttgacaaaaaaattggcgaaagttcctccatcaag
ttcatgacagatggaatattactacgcgagcttcagagtgattttttgttgatgcgatat
tctgtaataattcttgatgaagctcatgagcggagcttgagcacggatatacttattgga
atgctttctcgtgtaattagtactcgccaggaaatatatgctaagcagctgctttctgga
aaatctatagatcctagacaacaagtttttccgttaaagcttgtgctgatgagtgccaca
atgcgagtggaagacttcatttctggtagaaagttgtttcgtgaaatcccgccagtcata
gaagttcccaccagacaatttccagtaaccactcacttctcaaaaaaaactgggacggac
tatattgaccaagcatataaaaaagtcttggcaattcacaagaggctgccccgtgggggc
atacttgtcttcgtcactgggcagagggaagtagagtccttgtgtcgaaaactacgtaga
gcttcagcagaactggtcatgaaaacatctggaaggaaaattgagtataatacccatgat
gcctctaaaataaatgttgaactactggatatgaatgagattaatgaagcatttgaggtt
gatgaaaattcagccgaccgtcaagttgacaggtttagctccattgatgaagatcggggt
aatataactgaggatgaattggatgcttcgtatgattcagaaacagaaacagagagtgaa
gtggaaattgatgatgatggggacttattgttacacgataccacagaaattgatggtgtt
ggtgcagatgttttaggagagacggggagcattgcttcactgaaagctgcttttgaagtt
ttggccagtaaaacttctgatgggaaacagcccagttcagttacactagatgcttgctgt
aataaattccgtcctattcttgggaaaaagagtgagattgatattcacaattctcctggt
ggcttgcatgttctccctctctatgccatgctgcctgcggcttctcagcttcgcgtattt
gaagaagtcaaggaaggagatcgactagtagttgttgccacaaatgtggctgagacctct
ttaactatacctgggataaagtatgtcgttgatactggcagagtaaaagtgaaaaactac
aattcctcaaatggtatggaaacatataacatagagtggataagtaaggcatcagctgct
caacgtaaaggaagagctggaagaacaggacccggacattgttatcgtctttattcttct
gccgtatataataatgaatttcctgacttttctccagctgaaatattgaaggtccctatt
gatggtgttgtccttctaatgaaatctatgaatattgaaaaggtatccaattttccattt
ccaactccacctgatgttgctgccttgggtgaagcagaacgttgcttgaaggcgcttgaa
gcacttgacagcaatggcagattaacacccgtggggaaggccatggctcgttaccccatg
agtcctcgccactcaaggatgctccttacggttattcaaatcatgtacgaggagaaaagt
tatccccgcagtaaattagtgttagcatatgcagttgcagcagcggctgcattgagttta
tcaaatccttttgtgaggcagtttgaaaatgactcaaaaactcatgacttggatcaggat
gaaaatcccggcgctcctgtgaacaaaatggtttcagagatgcaagaaaagttgagaagg
aaaaaactaaaagaaactataaaggtgtttcgggaaaaattttctaatcctatcagtgat
gctctgactgtagcttatgctttgcagtgctatgaactttcgaggagcccagtaaagttc
tgcaatgacaatgccctacatccgaaaactatggaggaaatgtccaagctgagaaagcaa
ctgctccaacttgtgtttaatcaatgtggtgcatctggcaatgagaagggtttttcatgc
atttttggaaatctggaagaagttgaacatgtttggagggtttcccatgataaaagtcct
ctttcattgtatgaggaagacctcttaggccaagctatatgtgctggttgggcagatagg
gtggcgaaacgcattaaaggaacctcagggtcatctgaagtagatagaaaagttcacgcc
gtgcggtatcaagcctgcatggttgaagagactgtgttcctccaccgttggtcagctgtt
tctaatgctgcccccgaatttttggtttacactgagctaatacagacaagacgtccatac
atgcatggtgtaactagtgtaaaaccagaatggcttgttaagtatgctccgtctttatgc
actttctcggcaacctcaactgatgcgaaacagtattatgagcctgtgactgaccgagtg
ttgcatgatgtcattccagcctttggtcctcgtctatggaagcttcccccacatagttta
cctatcactaattatgtctctcgagtgacaattttcgcttatgcgttgcttgaaggtcag
gttttgccatgcttgaaacatgctcgtgagtttatgaaggcacctccagcaagtatttta
cggccagaggcacaaggccaaagacgggttgggaatttgttagccaagttgaacaccaaa
aagatagacagttgttctatgttaagagaggtctggaaggagaatcctgatgaattgcgt
tcagaaatccaggactggtttaaggagagtttccacaagaatttggcaactctgtggtca
gtcatgcttagggaagttgttttagagctgggagaacggttttcaaagagacagaaaaga
taa
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