Fragaria vesca (woodland strawberry): 101301987
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Entry
101301987 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03013
Nucleocytoplasmic transport
fve03015
mRNA surveillance pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101301987
09122 Translation
03013 Nucleocytoplasmic transport
101301987
03015 mRNA surveillance pathway
101301987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101301987
03041 Spliceosome [BR:
fve03041
]
101301987
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101301987
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101301987
Spliceosome [BR:
fve03041
]
Complex C
Other components
EJC/TREX
101301987
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101301987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
101301987
NCBI-ProteinID:
XP_004303319
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All DBs
Position
LG6:17879565..17885209
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AA seq
428 aa
AA seq
DB search
MGEIRDNDGYEEELVDYDEEEQNAPNSVSGKPNGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIEPVAGQVAALI
LCHTRELAYQICHEFERFSTYLPELKVAVFYGGVSIKVHRDLLKNECPHIVVGTPGRVLA
LARDKELGLKNVRHFILDECDKMLESLDMRRDVQMIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSESEKNRKLTDLLDALDFNQVVIFVKSVS
RAAELNKLLADCNFPSICIHSGMPQEERLKRYKNFKEGLSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSSADSDVLNQVQSRFEVDIKELPEQI
DTSTYMQV
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaatcagagacaacgatgggtacgaggaagagctcgtcgactacgacgaggaa
gagcaaaacgcccccaactccgtctccggcaaacccaatggcgaatccgtgaaaaagggc
tatgtcggcatccatagttcgggattcagagacttcctgttgaaaccagagctgcttcga
gcgattgtggattctggattcgaacatccatctgaagttcaacacgagtgcatccctcaa
gctattttaggaatggatgttctttgccaagcgaaatctgggatgggaaaaactgcagtc
tttgttctgtcaactcttcagcaaatagaaccggttgctggtcaagttgctgctctcatt
ctttgccacacaagagaattggcttaccagatttgtcatgaatttgagaggtttagtact
tacttgccggagctaaaagttgccgtcttctatggaggtgtaagtattaaggttcacaga
gatttgctgaaaaatgaatgccctcatattgttgtgggaacacctgggagagtgttggct
ctggcgagagataaagagcttggactgaagaatgtgaggcattttattcttgatgaatgc
gacaagatgcttgaatcacttgatatgaggagagatgtgcagatgatcttcaagttgact
cctcatgacaagcaagtgatgatgttttctgcaacactaagcaaggagatccgccctgtc
tgcaagaaatttatgcaagatccgatggagatttatgttgatgatgaagcgaagttgacg
cttcatggtctcgtgcagcattacatcaaattgagcgaatctgagaagaaccgcaagctg
accgaccttctagatgcattggatttcaatcaagttgttatttttgtaaaaagtgtgagc
agagcagctgagttgaacaagttacttgctgactgtaatttcccctctatctgcattcat
tctggaatgccacaggaagaaaggttgaaaaggtacaagaatttcaaggagggcctttca
aggatacttgtggcaacagacttagtaggaagaggaattgacattgaacgtgttaacatt
gttatcaactatgacatgccagattctgctgatacctacctacacagggttggtagagcc
ggaaggtttggtactaaagggttggcaataacatttgtctcatcctcagctgactctgat
gtacttaatcaggtccagtcaaggtttgaagtggacataaaggagctcccagagcaaatt
gatacttctacatacatgcaagtatga
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