Fragaria vesca (woodland strawberry): 101302011
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Entry
101302011 CDS
T02666
Name
(RefSeq) protein RRP45A-like
KO
K03678
exosome complex component RRP45
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101302011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101302011
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
101302011
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
101302011
NCBI-ProteinID:
XP_004288603
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Position
LG1:21711904..21719640
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AA seq
465 aa
AA seq
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MEQRLANTWRMTVNEKKFIETALESGLRIDGRRPFDYRTVDIKFGKDDGSAEVHLGQTHV
MAFVTAQLVQPYRDRPNEGTLSIFTEFSPMADPSFEPGRPAEYAVELGRVIDRGLRESRA
VDTESLCILSAKLVWAVRVDLHILDNGGNLIDAANIAALAGLLTFRRPECSLGGENGQEV
IIHPPEEREPLHLIIHHLPIAVTFGFFSYESSVVIDPTHHEEAVMGGRMTATLNSNGDVC
AIQKAGGEGILQGVIMQCLRIAAAKAGAISDMIKKEVDSHNTQRALLKIKRHSSSVPMDV
DRGGSNLGLKQNSSVEMGVDEFSGHHVERLKQVPEEGIAYQSGGVESETISSDNTQINRS
NADTKNFIGGPSSWDPYSMGVDSDSLKASLGSQGMPMPIEKQNSKGEETTSKPEPEDAPE
DNNLKTSPLGEASAEQANGEKTLKDAVKAKNRKSRRKSRSSSGPS
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaggctggcgaatacatggcggatgacggtgaacgagaagaagttcatcgag
acggcactagagtcgggactccgaatcgacggccgccgtccgttcgactaccgcaccgtc
gatatcaagttcgggaaagacgacggctccgcggaggtgcacctcggccagactcatgta
atggccttcgtcaccgcccagctcgtccagccctaccgcgacaggcccaatgaaggcact
ctctccatcttcaccgagttctctcccatggccgacccttccttcgagcctggccgcccc
gccgagtacgccgtcgagctcggccgcgttattgaccgcggtctcagggagagccgggca
gttgatacggagtcgctctgtattctctctgccaaattagtatgggctgttcgtgttgat
ctccacattcttgataacggagggaatctcattgatgctgctaatattgctgcactggcc
ggtttgttgacgtttcggaggcccgagtgctcattggggggagaaaacggtcaggaagtc
atcatacatccacccgaggagagagagccgcttcatctaataatacatcatcttcctatt
gcagtaacttttggattcttcagttacgagagcagtgtggttattgatccgacccaccat
gaagaggctgttatggggggacgaatgaccgctacacttaactctaacggtgatgtttgt
gccattcaaaaggctggaggggagggcatcttgcagggtgttataatgcaatgtttgcga
attgctgctgccaaggctggtgccatctcagatatgataaagaaagaggttgattcacat
aacacacaaagagcattactgaagatcaagcgtcattcttcttctgtcccaatggatgta
gatagaggtggttctaacctagggttgaaacagaactcttctgttgagatgggagttgat
gaattttcagggcatcatgtggagagactaaagcaggtgccggaggaaggcattgcttat
caaagtggtggtgttgaaagtgaaactatatcgtcagacaacacacaaattaacaggagt
aatgcggataccaagaattttattggggggccctcaagttgggatccttactcaatgggt
gttgattcagattccttgaaagcttctctagggtcccaaggtatgccaatgcctattgag
aaacaaaactcaaaaggcgaggaaacaacaagcaaacccgagccagaggatgctcctgaa
gataacaatctaaagacttcaccccttggggaagcatctgcagaacaagcaaatggagag
aaaaccctgaaggatgctgtaaaggcgaagaacaggaaatccaggagaaagagtcgctcc
tcttctggtcctagctaa
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