Fragaria vesca (woodland strawberry): 101302218
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Entry
101302218 CDS
T02666
Name
(RefSeq) uncharacterized protein At3g06530
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101302218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fve03009
]
101302218
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
101302218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_At3g06530
HEAT_HEATR1
BP28CT
U3snoRNP10
HEAT_EF3_N
Clathrin-link
Motif
Other DBs
NCBI-GeneID:
101302218
NCBI-ProteinID:
XP_011470043
LinkDB
All DBs
Position
LG7:19574462..19587903
Genome browser
AA seq
2121 aa
AA seq
DB search
MATSIASQLKVLVSRIPVDQDPSQKRPFTRPSILFDPKEAADIDIDTIFAIGVQGLELLV
STDERFRNFKNDLFSYQSKELDRELMGKEENKSIDVSISKFLRLLSGHFELPSSLKTLEY
LIRRYKIHVYNIEELVLCALPYHETHAFVKIVQLINFGNSKWKFLEGVKRSGAAPPRNVI
VQQCIRDMGVLEALFDYASPSKKYRPSKPVIRFCTAVVIEVLGSVASVESHVVKRIYALI
HSVLEVGTDGHSENKAGAMMIVGMLASKVTISPGLVKGLILLIAKVAEEDAKESADLQLF
RLSLMTLINLVQLQVVDNFPMKALESLIGIRDFADILLGLFNKFKIDRFLSVLLDSLVDY
SSSNESCQLALISILDTVPSKNFVHHIVPKVLSSCLQRSKDLENSILFSSGSWAEKVLFV
LRKYPSELHGAADKFLEKNVQSKKRGSVHEALRKMLDGNLDRSLACSESNIWFRLHHPEA
DVRRRTLSEMKTSGLLEAKGTNSQSLVIIQDGILRQLQDNDLTVVRAALSLDKLSTLLNP
SDLTEVLDNLLRRCIGLLTTGSLENNSLACDVAILCLKNAVAVIHQNVECCNKLAAMIFP
LLLVLPKTQRLNLKALELAKAEKWPLFENLAAACNTEHSLQPGSLSSINMATITSLASRF
LLHPEKSMPWLVQSSNEFELSKTLFFLVMMQTVLIEKESVESLELFEVLFPALKSEWESF
ESTGLNSIAEFKTEMLNWDCSRFLDNIDSNLMALNTNILICIFWRLMEAFLSAMPADVPL
DGDGKWVSWLRELFTFFSGCQFKNIFKEHRHYLVTKSKISAVSFLAKFFTEEAVPITVQI
ESLHCFSYLCLQSEVRMAVQFLAEFPSLLVPLASSNQEVRNVAMNCIEGLHTFSSHVDSL
SKKNGNRAVRINHLDKLLDLVVQQKRLILSDRNLLPSLLASLLSPSFESFLGPKNIEIRF
DQSTRDEILTFMLNSAMKLPEYAKLAILSLVRGTGNAIIHHKEVKSYLSHLLGRRSRDMN
ISSQCLSKIELQILCLLLECCAVPSSTDGHVFEDQLLEALQLDGLAPEEASTVQPCITVL
QKLNSQIYSGLKTEVQELLFRKLVTAFHNPNGDIQNATRAALQRLHITCSTIVHTLDHVV
KNGSCAIRSVQRTKKMKSQKSTPSNDVICERENALSLLGSLLGIILFKKDIEKRNSLLGP
LFKLLFKTFSKEWVEDQFNTSEATSSTVNYIQQTLLIILEDISSSLISSIPVEDNIVNEI
NVKLLVECAHSAKDGVTRNHVFSLISSITKIVPEKVLEHMLDIFAVIGESAVTQIDSHSQ
RVFEDLLSTVVPCWLSGTGSNDKLLEIFVNVLPEVAEYRRLSIVVYLLRTMGESNSLASL
LVLLFRSIISRKGISCFDNVHASDTSLQREWEYALGLQICEQYSCMIWLPPLVVLLKQIR
MGEEVFRELLIAMRFILHKLQDPEFALKMASGEDSDKIQATLGELMEQVVSLQQLVDARR
KDKSISVVRKDLKECMHSVVWTITGVMNPSTLFNGITKLLGDRDRNVEKKALGLLCETIR
NLDTVKAKLKFNKGSSLRWNHLDEISLSSLRVTCLKIVQLIDDSSDDMEVSLKVAAALAL
DVLAQRFPSYSSIFSECLPSVTKSISMHDLAVSSSCLQTTGALINVLGPKALSELPHIME
SLIKISHEVLVSSHTKAISSGGSRPVLLKPQESLVLSILVTLEAVVVKLGQFLSPYLEDI
TRVMVIDLDYALGSDQKLKMRAESVRKLITENITVRLALPPLLNIYSSTVESGDSSLIIY
FGMLANMIGRMDRSSVGSYHAKIFERCLIALDLRRQHPASVRRIDDVENSVFTAMISLSM
KLTETMFRPLFIRSIDWANSEVEDISCAGYIPRAISFYGLVNKLAENHRSLFVPYFKYLL
ENCVRYLTVAGDAMPSGSTRKKKAKIQESDNSMFLGNWHLRALVLSSLHKCFLYDTGSLK
FLDSSNFQVLLKPIVFQLVIEPPQSLEEHSDIPSVQEVDELLVVCIGQMAVTAGSDLLWK
PLNHEVLMQTRSDKVRARILGLRVVKYLVEHLREEYLVFVPETVPFFAELLEDVEPSVKS
LAQEIFNELSTMTGENLSEYI
NT seq
6366 nt
NT seq
+upstream
nt +downstream
nt
atggcgacctcgattgcgtcccaattaaaagtcctggtatcgcggataccagtcgaccag
gacccttcccagaagaggcccttcactcgtccttcgatcctcttcgaccccaaagaggcc
gccgatatcgatatcgacacgattttcgcaatcggagtccaaggtctggagcttcttgtt
agtaccgacgagcggttccggaattttaagaatgatctgttcagctaccagagtaaggag
ttggacagggagttgatggggaaagaggagaacaaaagcattgatgtttcgattagtaag
ttcttgagattgctgtctgggcatttcgagctcccatcgtcactcaagactctcgagtac
ttgattcggagatataagattcatgtgtacaacattgaggaattggttttgtgtgccctg
ccgtaccatgagacgcacgcttttgttaaaattgttcaactaattaacttcggaaatagt
aagtggaaatttctagagggcgtgaaacgatctggcgcagctccaccgagaaatgttata
gtgcagcaatgtattcgtgacatgggggttttggaggctttattcgactatgcatccccg
tcaaagaagtatcggccttcaaagccagtgatcagattttgcacggcagttgtcattgag
gttttgggttccgttgcatctgttgaaagtcatgttgtgaaaagaatctatgcacttatt
cattctgtactggaggtcggcacggatggacattcagaaaacaaggctggtgctatgatg
attgttggtatgctagcaagtaaagttacaatatctcctggacttgtcaaggggttaatt
ttattaattgctaaagttgctgaggaggatgcgaaagagtcggctgatcttcagcttttt
cgcttatcacttatgactttgatcaaccttgttcagttgcaagtcgtggataacttcccc
atgaaagctctggagagtttgatcggcattagggattttgctgacattcttctggggctt
ttcaacaagttcaaaattgatagatttctttctgtgcttttggattctcttgttgactat
agttcgtctaatgaatcctgccagcttgcgttgatctccatattggatacagttccttcc
aagaattttgttcatcatatagttccaaaggtcctatcttcctgcttgcaaaggtctaag
gacttagaaaattcaatattattttcatcaggaagctgggcagagaaagttttatttgtt
cttagaaaatatccatctgaactgcatggagcagctgacaaatttttggaaaaaaacgtt
caatctaagaaacgcggttcggtacatgaagctctgcgtaaaatgttggatgggaacttg
gatagatcactagcttgctcagaatcaaacatttggttcaggttgcatcatccagaggct
gatgttcgtcgccgtacactttctgaaatgaagacttcaggtcttctggaagccaaggga
acaaattcgcagagtcttgtaatcatccaagatggcatattgcgacagcttcaggataat
gatcttacggttgtcagagcagctttgtcgttagacaaattgtccactttattgaaccca
tctgatcttactgaagtattggataatctgcttagaagatgcattggtcttttgacaaca
ggttcgctggagaacaacagcctagcatgtgatgttgctattttgtgcctgaagaatgct
gttgctgtcatccatcagaatgttgaatgttgcaataaactagctgctatgatatttcct
ttgctccttgttttaccgaagacacagaggttaaatttgaaagcattggaattagccaag
gcagagaaatggccactgtttgagaatcttgctgctgcatgcaatacagaacattcatta
caaccaggaagcttatcctccatcaacatggccaccattactagtttggcgagcagattt
ttgttgcaccctgaaaaatccatgccttggcttgttcagagttctaatgaatttgagttg
tcaaagacgctcttctttctggtgatgatgcagacagttctgattgaaaaggaatctgtt
gaatctttggaactttttgaagttctgtttccagcattgaagtcagaatgggaatcgttt
gaatctacaggtcttaactctatagcagagttcaaaaccgagatgctgaattgggattgc
agcagatttcttgataacatagattccaatttgatggcattaaatacaaatattctaatt
tgcatcttttggaggttgatggaggcatttctatctgcgatgcctgcagatgtcccattg
gatggtgatgggaagtgggttagctggctaagggaattgttcaccttcttctcaggctgt
cagtttaagaacatttttaaggaacaccgtcattaccttgtcacaaagtccaagatctct
gctgtttctttccttgccaagtttttcacagaagaagccgttcctattacagtccagatt
gagagtcttcactgtttttcctacctctgccttcagtcagaagtcagaatggcagttcaa
tttcttgcagagtttccatctcttcttgttccactggctagtagtaaccaggaagtaaga
aatgttgccatgaattgtattgaaggtttacacacattttcatctcatgttgactcgttg
agcaagaaaaatggaaaccgtgcagttcggattaatcatcttgataagctgctggacctg
gtggtccagcagaaaaggctaatcctgtcagatagaaacttgcttccttctctcttggcc
tctttgctgagcccgtccttcgagagcttcttagggccaaagaatattgagataaggttt
gatcaatctacaagagatgagattcttactttcatgttgaattctgccatgaaactgcct
gaatatgcaaagcttgctattctttctttggttagaggaactggcaatgccattatacat
cataaagaagtgaagtcatatttgtctcatctcttgggaagacgcagtcgtgacatgaac
atttcaagtcaatgtttgtcaaaaattgaacttcagatattatgcctcctactggagtgc
tgtgccgtgccatcttcaacagacgggcatgtatttgaggaccaattattggaggctttg
caattggatggtttggctccagaagaagcttccactgtacagccttgtattactgtcttg
caaaagcttaacagccaaatctacagtggactgaagacagaagtgcaggagcttttgttc
cgtaaactggtaactgcatttcacaatccaaatggggacatacaaaatgcaactagagca
gccttgcagcgtttacatattacttgctccactatcgtccacactcttgatcacgtagtc
aaaaatggcagttgtgcaattcgttcagtgcagagaacaaagaaaatgaaaagtcagaag
tccactccgtctaatgatgtgatatgtgaaagagaaaatgcactctctttacttggttcc
ctccttggtattatattattcaagaaagacatagagaagaggaactctcttttgggccca
ttgtttaagcttctcttcaaaactttttccaaagagtgggtagaagatcagttcaacact
tctgaagctacatcaagcacagtaaattacatacaacagacactgctaataatcttagaa
gatatcagttcttcacttataagttctataccagtggaggacaacatagtaaatgagatt
aatgtcaaacttttggttgagtgtgcccattctgcaaaggatggagttactcgcaaccat
gtgttttcactgatttcctctatcacaaagatcgttccagaaaaggttttggagcatatg
ctggatatatttgctgttattggagagtcagcagtcacacagattgatagccattcacaa
cgtgtgtttgaggatcttttatctacagttgttccttgttggctttctgggacaggtagc
aatgacaaactgctcgagatttttgtcaatgtactgcccgaagttgccgagtatagaagg
ctatcaattgttgtgtacctactgaggactatgggagagtcaaatagcttggcgtcgtta
cttgttcttcttttccgttcaataatttcaagaaaagggatatcttgctttgataatgtg
catgcttcagatacctctttacagagagagtgggagtatgccctggggcttcaaatatgt
gagcaatattcatgtatgatatggcttccccctcttgttgtgctacttaaacaaataaga
atgggtgaagaggtatttagagaattgttgattgcaatgaggttcatcttgcataagctg
caagatccagagtttgcgctcaagatggcatccggggaagactcggacaaaattcaggct
acattgggagaactcatggagcaggttgtctctctccagcaacttgtagatgcgagaaga
aaggacaaaagtatcagtgttgtgaggaaagatttgaaggagtgtatgcattctgtagtg
tggactattactggggtcatgaacccttcgacactcttcaatggcataactaaattgctt
ggcgacagagataggaacgtggaaaagaaggcacttggactcctatgtgaaaccattagg
aatcttgacacagtcaaagcaaagcttaagtttaataaaggctctagtctccgttggaat
catcttgatgagatttctctcagctcgttacgagttacatgtctgaaaattgttcagcta
attgatgattcttctgatgatatggaagtctccttgaaagtggcagcagcgttggctcta
gatgttttagcccaaaggttcccttcttactcttccatcttcagtgagtgtctaccatct
gttacaaaaagtatcagtatgcacgatttggcagtgtcatctagctgccttcaaacaact
ggtgctttgatcaatgtgcttggacccaaggcactctctgagcttcctcacataatggaa
agtttgatcaagatttctcatgaagtccttgtatcctcgcatacaaaagccatatccagc
ggtggtagccggcctgtgttgctaaaaccccaggaatctctagttttgtctattcttgtt
actttggaggctgttgtggttaagctagggcagttcttaagcccgtaccttgaagatatt
acaagagttatggtgatcgatcttgattatgcattagggtctgatcagaagctaaaaatg
cgggctgagtcggtacgaaaactcatcaccgagaacatcacggttcgacttgctctacct
cccttgttaaacatctactctagcacagttgagtctggggattccagtttaataatttat
tttggaatgctggccaacatgattggaagaatggataggtcatctgttggtagttaccat
gctaagatttttgaacggtgcttgattgctcttgatctacgtcgtcaacatccggcttct
gttcgaagaattgatgatgtagagaatagtgttttcactgcaatgatttctctctctatg
aagctcactgagacaatgtttagacctcttttcattaggagtattgattgggcaaactca
gaagtggaagatatttcatgtgcgggatatatacctagggctatctctttctacggcctc
gtaaacaaacttgcggaaaaccacaggtccctttttgttccttatttcaaatacttgctg
gagaattgtgtacggtatcttactgttgctggagatgcaatgccttctggttcaacacga
aagaagaaggccaagattcaggaatctgataacagcatgttccttggaaactggcatctt
agagcgttggtcttatcgtcattacataaatgttttctctatgatactggaagcctgaag
tttcttgattcttccaattttcaggttctactgaagccaattgttttccagcttgtcata
gaacctccacagtctctagaggagcattctgatattccatctgtacaggaagttgatgaa
ttattggttgtttgtattggtcaaatggctgtgaccgcaggaagtgatcttttatggaag
cccttgaatcatgaggtgctgatgcagacacgcagtgataaggtccgtgcaagaattttg
ggcctgagagttgttaaatatcttgtggagcatctaagagaagaatatctggtatttgtt
cccgaaacggttcccttctttgctgagttgctcgaggatgtcgagccttctgttaaatcc
ttggcacaagaaatcttcaatgaattgagcaccatgactggtgaaaacctctcagagtat
atctga
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