KEGG   Fragaria vesca (woodland strawberry): 101302302
Entry
101302302         CDS       T02666                                 
Name
(RefSeq) uncharacterized LOC101302302
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101302302
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:fve03021]
    101302302
   03019 Messenger RNA biogenesis [BR:fve03019]
    101302302
Transcription machinery [BR:fve03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     101302302
Messenger RNA biogenesis [BR:fve03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     101302302
SSDB
Motif
Pfam: NUFIP1
Other DBs
NCBI-GeneID: 101302302
NCBI-ProteinID: XP_004288604
LinkDB
Position
LG1:22042426..22050987
AA seq 577 aa
MIPHYNTFHQNSGQAHPASGNGDISVPSPQQQQGMPFNTALANSCNMLPPSMGPQPGFMN
LSNNIVPMQNNHMFMPMSPFGSLGPISQPGHPGVGFSVPQSNAVNMNLAASYPLNGQFCN
MAQTVNQVNPNMGFLPGQLFAHNLLNLQQMNQNIGPYGQFCLPNLLNKNQVVPMQMQNPG
QGGPYYAFGGINQAAQAGVPQNPAFFTTPNFGNVHSPNQARQQINQNQQNNSVQGTQGNH
IKAGGVYNSNSDRKSSPSKSFIKHPKQGLQQQGGFQNSQFHHNKNAKGKFAFPNRQNTKE
AGLSNEKGKSARADSMDHSRERKSERCLSLSYTEQEVQLWREGRRKNYPSNTNIEKKLSE
KMMDSVAIQREATARKEQLKEILTKQAEMGLEVADIPSHYLSDSEKQGNRREENRSWKNN
CRSQNKFGKRDRFDKKDRFAKRQRSSQKDSSSDPSFCKREPTLLQKLLSSDIKRDKSRLW
QVFRFMVTNSFLKDFPDKPLKFPTVVVKESVVEEDVVEELSSVAGKGAYEGPDKSMVEIL
NNNDYIDSSYNDVHVEDDDEDEEVIERPEEEEGEIIN
NT seq 1734 nt   +upstreamnt  +downstreamnt
atgatacctcactacaatacctttcaccaaaattccggccaagctcacccggccagcggt
aatggtgatatctctgttccatctcctcaacagcagcagggcatgccatttaatacagca
ctggcaaattcgtgtaatatgttgccaccgtccatgggacctcagcccggtttcatgaat
ttgtctaacaacattgttccaatgcaaaacaaccacatgtttatgcctatgtccccattc
ggttcccttggtcctatatctcaaccaggtcatcctggtgttggattttccgttccacag
agtaatgcagtcaatatgaacttggctgcttcctatccgcttaatgggcagttctgcaac
atggcgcagactgtcaatcaagtgaatccaaatatgggttttctacctggtcaattgttt
gctcataacctgttgaatttacagcagatgaatcaaaatattgggccatatgggcagttc
tgtttgccgaatctgttgaataagaatcaggttgtgccaatgcaaatgcaaaaccctggc
caaggtggtccttattatgcatttgggggaataaatcaagcagctcaggctggtgttccg
caaaatcctgctttttttacaactcctaattttggtaatgtgcactctcctaatcaagcc
agacaacaaatcaaccagaatcagcaaaacaacagtgtccaagggacacagggtaatcat
ataaaagctggtggcgtttacaattccaattctgacagaaaaagttcgccaagcaaaagt
ttcataaagcatccaaaacaagggttgcagcagcaagggggatttcagaattctcagttt
catcataacaaaaatgcaaagggaaagtttgcttttcccaataggcaaaacacaaaagaa
gcagggctaagcaatgagaagggaaaatctgctcgtgccgactctatggatcacagcagg
gaaaggaaaagtgaaagatgtctttctttgtcctatacggaacaagaagttcaactctgg
cgtgaaggacgtaggaagaactacccatcaaacaccaacatagagaagaagctaagtgaa
aagatgatggactcggtggccattcagagagaggccacagcacgaaaggagcaactcaag
gagattcttacaaagcaggctgagatgggacttgaagtcgctgatataccatctcactac
ctatcagactcagaaaaacaagggaatagaagagaggagaataggtcatggaaaaacaat
tgtagatcacaaaacaagtttggtaagagagacagatttgataagaaggaccggtttgca
aagaggcaaaggtcaagtcagaaggattcatctagtgacccttcattctgcaaaagggag
ccaaccttactgcagaagcttcttagttcagatatcaagagagataaaagtcgcttatgg
caggtgtttaggttcatggtgacaaactcttttttaaaagattttcctgacaaacctttg
aaatttccaactgtggtagttaaagaaagtgtggtggaggaagatgtggttgaagagttg
tcttcagttgccgggaaaggtgcctatgaaggacctgacaagtccatggttgaaattctt
aataacaatgattatatagattcttcttacaatgatgttcacgttgaagatgatgatgaa
gatgaagaggtaatagagagacctgaggaagaagagggagagatcatcaactag

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