Fragaria vesca (woodland strawberry): 101302671
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Entry
101302671 CDS
T02666
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101302671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101302671
Spliceosome [BR:
fve03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
101302671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
PRP4
Beta-prop_WDR19_1st
Beta-prop_DCAF4
WD40_RFWD3
eIF2A
Beta-prop_Vps41
WD_LRWD1
Beta-prop_SCAP
Beta-prop_IFT140_1st
WD40_like
Beta-prop_WDR75_2nd
Nbas_N
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
101302671
NCBI-ProteinID:
XP_004303627
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All DBs
Position
LG6:complement(23383563..23387218)
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AA seq
528 aa
AA seq
DB search
STALLLSSSSPKPKPNKMTMEEEEEKLLSTIAASEPNGDAAPMTTDSDSDSADQGAVASA
GVEYQISEEQKQLQERHERAKQELLRKRRASALAVPTNDNAVRARLRRLGEPMTLFGERE
MERRDRLRMILANLDPAQQESLVKSHEDDEAANADDSDFEQEIEYPFFTEATRPKALREA
RVHIAHYSMPLAALRLQRARRREEDPDEDMDAEINWALGQASNLKLDCSEIGDDRPLSGC
SFSPDGTLLATCALSPVAKLWNMPHVTKVATLKGHTERLTDVAFSPVQNHLLATASADRT
ARLWNSEGGHLLTFGGHLDRLACIAFHPSGKYLGTTSFDKTWRLWDVETGEELLLQEGHS
RSVYAIDFHPDGSLVATAGLDALTRVWDLRSGRSILTLEGHVKKVLALSFSPNGYHLATG
GEDNTCRIWDLRKKKSIYIIPAHSNLISQVKFEPQEGYFLVTGSYDMTAKIWSSRDFKPV
RTLSGHEAKVTSLDVSGDGHHIATVSHDRTIKLWSSGTTEKDQEMDVD
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
agcaccgctctactactctcgagttcttccccaaaaccaaaaccaaacaagatgaccatg
gaggaggaggaggagaagcttctctccaccatcgccgcttccgagccaaacggcgacgcg
gcaccgatgaccaccgactccgactccgactccgccgatcagggagccgtcgcctcggcc
ggagtcgagtaccagatatccgaggagcagaagcagttgcaggagcggcatgagagagca
aagcaggagctcctgaggaagcgccgcgcttctgctcttgccgtccccaccaacgacaat
gccgtcagggctcgtctccggcgcctaggcgagccgatgacgctgttcggtgagcgcgag
atggagaggcgcgaccgcctgaggatgattctggccaacctcgatccggcgcagcaggag
tcgctggtcaagtctcatgaggacgacgaggctgctaatgccgacgattctgacttcgag
caagaaattgagtatcccttcttcaccgaagcgaccaggcctaaggctttgcgtgaggct
agggttcatattgcgcactactccatgccactcgccgccttgcggcttcagcgtgccagg
aggagggaggaggatcccgatgaggatatggatgctgagattaactgggcgttagggcag
gcctcgaatttgaagctcgattgcagtgagattggggatgacaggcctctttcgggttgc
tccttctcgccagatgggacattgcttgccacctgcgctttaagtccggttgccaagttg
tggaacatgcctcatgtaactaaggttgccaccttgaagggacacacagagcgcttaacc
gatgtcgcattttctcctgtgcaaaaccacctcttggctactgcctctgctgataggact
gcgaggttgtggaacagcgaaggaggacacctgttgacattcgggggacatttggaccgt
cttgcctgtattgccttccatccctcaggaaagtacttgggaacaactagctttgacaag
acttggagactttgggatgttgagaccggtgaagagttgcttcttcaagaaggtcacagt
aggagtgtatatgccatagactttcacccagatggctcattggttgcaactgctggattg
gatgcgcttactcgtgtttgggacctccgtagtggtagaagtatacttaccttggaaggc
catgtcaaaaaagttcttgcgctcagtttttcaccaaatggctatcatctagccactggg
ggtgaagacaacacttgtaggatatgggatttaaggaagaagaaatccatatacattatc
cctgcgcactccaatctcatatcacaggtcaaatttgaacctcaggagggatatttcttg
gtaactggctcatatgatatgacagcaaagatatggtcatcccgagattttaagcctgtc
aggacgctctctggacatgaagcaaaagttacttctttggatgtttcaggagatggacat
cacattgctactgtatcacatgaccgaaccatcaaactatggtcaagtggtaccactgag
aaggaccaggaaatggatgttgattaa
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