Fragaria vesca (woodland strawberry): 101302870
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Entry
101302870 CDS
T02666
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101302870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101302870
03041 Spliceosome [BR:
fve03041
]
101302870
03036 Chromosome and associated proteins [BR:
fve03036
]
101302870
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
101302870
Spliceosome [BR:
fve03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101302870
Complex B
101302870
Complex C
U2 SnRNP specific factors
101302870
Chromosome and associated proteins [BR:
fve03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
101302870
TFTC complex
101302870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
101302870
NCBI-ProteinID:
XP_004288379
LinkDB
All DBs
Position
LG1:17052731..17057334
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQRATGIVCAINGNFSGGKTQEIVVARGKVLELIRPDDNGKIQTLLSVEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMVGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEVDQDSSGNAQREAQKHLTFYELDLGLNHVSRKWSDQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGQADVRAVIPRRVDLPAERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEHNNDIVSELKIKYFDTIPVTTSICVLKSGFLFAASEFGNHSLYQFQAI
GEDPDVESSSASLMETEEGFQPVYFQPRKLKNLVRIDQVESLMPIMDMKVSNLFEEETSQ
IYTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKSVSDEFDAYIVVSFANAT
LVLSIGETVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWKTPGKR
NIVKVGSNRLQVVIALSGGELIYFEVDMTGQLIEVEKHEMSGDIACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSIPESLLFLEVQASVGGEDGADHPANLFL
NAGLQTGILFRTVVDMVTGQLSDSRSRFLGLRAPKLFSINIRGKHAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGSALRVFTIERLGETFNETVIPLRYTP
RKFVVQVKRKLLVIIESDQGAFTAEEREAGKKECFEAAELGENRNGNVEQMENGDNEEDP
LSDEHFGYPKAESDKWVSCIRVLDPKTATTTCLMELLDNEAAFSVCTVNFHDKEYGTLLA
VGTAKGLQFWPKKSITAGYIHIYRFLDDGKSLELLHKTQVDGVPLALCQFQGRLLAGIGS
VLRLYDLGKKRLLRKCENKLFPNNIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFA
DDCVPRWLTASFHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGRIKWEQGKLNGA
PNKVEEIVQFHVGDVVSCLQKASLIPGGGECIIYGTVMGSLGALLAFTSRDDVDFFSHLE
MYMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPTLPMDLQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctcactctccagcgcgcgaccggcatagtctgcgccatcaatggc
aacttctccggcggaaagacccaagaaatcgtggtcgccagaggcaaagtgctcgaactc
attcgccccgacgacaacggtaagatccagactcttctctccgttgaaattttcggcgcc
attaggtccttagctcagtttaggctcactggctcccagaaagattatattgttgtgggt
tccgattcgggccgaattgttattctagagtacaacaaggagaagaatgtgtttgataag
atccaccaagagacttttgggaaatctgggtgtagaaggatagttccgggccagtacttg
gctattgacccgaaagggagggctgttatggttggagcctgtgagaaacagaaattagtt
tatgttttgaatagagataccgctgctaggttgaccatatcgtcgccgctggaagctcat
aagtcccatactattgtgtactccatttgtggtgtggactgtgggtttgataatcctata
tttgctgccattgagttggattattcggaggtggatcaggattccagcgggaatgcccag
cgggaggcccagaagcatttgactttctatgagctagatttggggcttaaccatgtctcc
agaaagtggtcggaccaggttgataatggtgccaatttgctggttactgttcctggaggt
ggggacgggccgagtggtgtgctggtatgtgcggaaaactttgtgatttataagaaccag
ggacaagccgatgttagggctgtgattcctaggcgtgtggatttgcctgctgaacgtggg
gttcttatagtctcagcagctactcacaagcagaagtccatgttcttctttcttttgcag
actgagtatggagacatattcaaggtcactttggagcataacaatgatattgtctcggaa
ttgaagatcaaatactttgatacaattccagtcacaacttcaatctgtgtgttaaaatca
ggatttttgtttgctgcttcagagtttgggaaccactctttgtaccaattccaggcaata
ggtgaagatcctgatgtggagtcttcctcggcttctttgatggagacggaagagggtttc
cagcctgtgtatttccagcctagaaaactgaagaaccttgttaggattgatcaggttgag
agcttgatgccgataatggatatgaaggtctctaatctctttgaagaagaaacatctcaa
atatatacactttgtgggcggggtcctcgttcatctctcaggatactaagacctggtttg
gctatcagtgagatggctgtgtcggagcttcctggtgtgccaagtgcagtctggacagtg
aaaaagagtgtgagtgatgagtttgatgcatacattgtggtgtcattcgcaaatgctact
cttgtgctttcaattggtgagacagtcgaggaagttaatgacagtgggtttcttgatact
accccatcacttgcagtgtctttgataggtgatgattctctcatgcaagttcatccaaat
ggcattaggcacatcagggaagacggacgtatcaatgaatggaaaactcctggaaagaga
aatattgttaaggttggctctaatagacttcaggtagtaattgctctgagtggaggagaa
cttatatactttgaggttgatatgaccggtcaattgatagaggtcgagaagcatgaaatg
tctggtgatatagcttgtctggacattgccccagtacctgaagggagacagagatctcgt
ttccttgcagttggctcatatgacaacacaattcgtatattgtcattggatcccgatgac
tgtatgcagattctgagtgtccaaagtgtttcttcaattccagaatctcttctgtttctt
gaggttcaggcatcagttggtggtgaggatggtgctgatcatcctgccaaccttttcctt
aatgccggtttacaaacggggattttgtttagaacagtggtggatatggtgacaggtcag
ctttctgattctcgttctcgattcttaggactaagagctccaaagctattttctattaat
ataagaggcaagcatgccatgctttgtttgtcaagtcgcccctggcttggttatattcat
caaggacatttcctgttaacaccgctatcatatgagactcttgaatatgcggcctcattt
tcatccgatcaatgtgcggaaggtgtagttgctgttgctggcagtgctttgagagttttt
accattgaaagactgggagaaacatttaatgaaactgtgattcctctgaggtacacccct
agaaagtttgtggttcaagtgaaacgaaagcttttggtaattatcgaaagtgatcaagga
gcattcacagcagaagagcgtgaagctgggaaaaaggagtgctttgaggctgcggaacta
ggtgaaaacagaaatggtaatgttgagcagatggaaaatggtgataatgaggaggatccc
ctctctgatgagcactttggctatccaaaggcagagtctgacaagtgggtttcttgcatt
cgagttcttgacccaaagacagcaactacaacctgtttgatggagcttcttgataacgag
gctgcattcagtgtatgtacagtgaattttcatgacaaggagtatggtacgcttttggct
gttggtaccgctaagggacttcaattttggcccaagaaaagtataactgcaggatatatt
cacatatatcgatttctagatgatggaaagtcccttgaacttttgcacaagacacaagtg
gatggtgttcctcttgctttgtgtcagtttcaaggaaggttacttgcagggataggatca
gtgctcagactatatgatttggggaagaaaagattgcttaggaaatgtgagaataagctg
tttccgaacaatatcatatccattcagacgtaccgtgatcgaatttacgtaggtgacatt
caagagtcattccactactgcaagtatagacgggatgagaatcagctgtatatatttgct
gatgattgtgttccaagatggcttacagcatcattccatatagactttgacactatggca
ggtgcggacaagtttggaaatgtgtattttgtgaggttaccacaggatgtttcagatgag
atagaagaagatccaacaggtgggaggataaaatgggagcaggggaagttgaatggcgct
ccgaacaaagtagaggagatagtgcaatttcatgttggtgatgtggtcagctgcttgcag
aaggcatctctcattccaggtggtggtgagtgcatcatttacgggacagtaatgggtagt
ttgggtgcattgcttgcatttacctcccgtgatgatgttgacttcttttctcacctggag
atgtatatgaggcaagaacatcccccattgtgtggaagagaccacatggcttacagatca
gcttatttcccggttaaggatgttattgatggggatctctgtgagcagtacccaacattg
cctatggatctacagaggaaaattgcagacgagttggacagaactcctggggagatactg
aagaaacttgaggaaattcgaaataagatcatttaa
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integrated database retrieval system
