Fragaria vesca (woodland strawberry): 101303127
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Entry
101303127 CDS
T02666
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03022
Basal transcription factors
fve03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101303127
09124 Replication and repair
03420 Nucleotide excision repair
101303127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101303127
03400 DNA repair and recombination proteins [BR:
fve03400
]
101303127
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101303127
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101303127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
WH_MCM3_C
Motif
Other DBs
NCBI-GeneID:
101303127
NCBI-ProteinID:
XP_011465754
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Position
LG5:16076409..16086582
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AA seq
606 aa
AA seq
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MSRAGQVIKRAKYKTSIKDPGTPGLLTMLEHRFVFRPSDPTSPAKLDVPFQLLKGQKNTR
EGSNKPPWLNITNNKDGSYIFEFESYPDLHACREIIANALEAAKGSSAPTITSAANASSS
ANEQFSTAELELRMKLMQEDSELQKLHKQFVGSGVLTESEFWATRKRLLDGDSRRKSKQR
VGFKSSMILDIKPMTDGRMNKVTFNLTDEIKYQIFALKPAVHQAFINLVPSKMTEKDFWN
KYFRAEYLHSTKNAVAAAAEAAEDEELAIFLKEDEILAREARQKIQRVDPTLDMEADQGD
DYTHIPDHGIFRDGNKDMTEQQNEQYRRTLSQDLNRQGAVVLQGRNLDADPEDPRSIAEA
LMLSREDPSDSAAQKRLDRITRMTEIDDLRESHDHPVAPLCIKDPRDYFDTQQANALRTL
DESRTGTEQTKRKLTTEEAYGSLKESISKIKSFGLSNSTVKPEVALMVITLVRKELSCGL
TQNISSTKYQLGKNPRESILDGLPNRTKEELLHHWTSIQELLRHFWSSYPITTSSLYVKI
GRLKDAMSQIYRQLEEIKEAVQSDFRHQVSLLVRPMHQALDAAFQHYEADLQKRAAKSGE
LPNGNG
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagggcggggcaagtgattaagcgtgccaaatacaagacttcgatcaaagaccca
ggaactcccggtcttctcaccatgttggagcacaggtttgtgttcaggcctagtgatccc
acctctcccgcaaagcttgatgtccccttccaactacttaaaggtcagaagaacactaga
gagggatcaaataaacccccttggcttaatatcaccaacaataaggatgggagttacatt
tttgagtttgagtcttatcctgatcttcacgcttgtcgagaaattatcgccaatgcccta
gaggctgcaaaaggttcttctgctccgacaataacttctgcagccaatgcctcttcgtct
gcaaatgaacaatttagtacggcagagttggagctccgaatgaagcttatgcaagaagac
agtgaactgcagaaacttcacaagcagtttgtgggtagtggtgtcttgacagaatctgag
ttctgggcaactaggaagaggttgcttgatggagatagccgtagaaagtcaaaacaacgg
gttggttttaaaagttcgatgatactggacatcaaacctatgactgatggtcggatgaac
aaggttacattcaatttgactgatgagattaaatatcagatattcgcccttaaaccagct
gtgcaccaggcatttattaatctcgttcccagtaagatgacagagaaagacttctggaac
aaatatttccgagctgaatacctccatagtacaaaaaatgctgtagcagctgctgctgaa
gctgctgaggatgaggaactggccattttcctaaaggaagatgaaatattggcaagggaa
gctcggcagaagattcagcgtgttgatccaactttggatatggaagctgatcaaggggat
gactacacacatattccagatcatgggatatttcgtgatggcaacaaggacatgactgaa
caacagaatgagcaatacaggaggactctatcacaagaccttaacagacaaggcgctgtt
gttcttcaaggaagaaatctagatgcggacccagaagatcccagaagtatagcagaggca
cttatgctgtcaagagaggatcctagtgacagtgctgcacagaagagacttgataggatt
actcggatgactgagatagatgaccttcgtgaatctcatgatcatccagttgctccatta
tgtatcaaggatcctcgagactactttgacacacaacaagctaatgctcttagaactttg
gatgagtcacgtactgggactgagcaaacaaaacgcaagctgactactgaggaagcatat
ggttccttaaaggagtcaatatctaaaattaagagctttggattgagcaattcaacggtt
aaaccagaagttgctcttatggttataacccttgttaggaaagaattgagttgtgggctc
acccagaatatttcaagtaccaaatatcaacttgggaagaatcctcgtgagagtattctg
gatgggttgccaaacagaactaaagaggaactcttacatcattggacgtctattcaagaa
ctactgaggcatttttggtcttcctatccaattacaacttcttctttgtatgttaagata
ggaagactgaaggatgccatgtcacaaatttatcgacagctagaggagattaaggaagct
gtgcagtcagacttcaggcatcaggtctccctccttgttcgtccaatgcatcaggctcta
gatgctgcttttcagcattatgaagcagacttgcagaaaagagctgcaaagagtggagag
ttgccaaacgggaatgggtag
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