Fragaria vesca (woodland strawberry): 101303861
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Entry
101303861 CDS
T02666
Name
(RefSeq) rhamnogalacturonate lyase B-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
fve
Fragaria vesca (woodland strawberry)
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
101303861
Enzymes [BR:
fve01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
101303861
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Gene cluster
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Wzt_C
Motif
Other DBs
NCBI-GeneID:
101303861
NCBI-ProteinID:
XP_004289511
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Position
LG1:19547071..19551140
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AA seq
736 aa
AA seq
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MQKAGRRSLKHWGWLVGTLAAMLVLVVYLVGEKKYEQTTPKTSTLLLRKILERYPRTQRQ
DLNILKPSSGRNFARPPYPGINMVTNNSGRRIVARTENPRVSMLRSQSQIRLDNGLVQLT
VSRPGGDVIGIKYKGSDNLLEHKNLRNNRGYWDVVWNKPGENLHYVDKLQATKFRVIMAT
ADQVEISFVKIYNVSQQHSAHVVPLDVDKRYIMRRGRSGFYAYAIFECREGWPEMKMEQI
RMVYKLQHEKFQYMVLSDTRQTFMPKDRDRKNGEQLAYPEAVRLTKPSNRAFKGQVDDKY
QYSMEDKDNKVHGWISIDNSLGFWMITPSDEFRSAGPMKQGLTSHVGPTTLSMFLSTHYA
GKQAGIELKRGEAWKKVFGPVFVYLNSAPRSNNSTGTLWNDAKEQMAEEVKRWPYNFTQS
EDFPPSDQRGSVSGRLIVHDRYMSESLLSASSAYMGLAAPGEVGSWQKESKGYQFWTRAD
KQGHFLIKDVRPGNYSLYGWVPGIVGDYKYEADIEIKPGSKIHLANLTYEPQRNGPTLWE
IGIPDRSAAEFYVPDPYPTLMNKLYNNDHSDKFRQYGLWKRYEELYPDHDLIYTIGVNDY
RHDWFYAHVTRSTGKERYVGTTWQIRFKLNSVMSQGNYTLQLALASATSSEIQVRFNDPS
VKQPHFSTGLIGGDNAIARHGIHGLYWFFSVNVPSSLLQEGTNTIYLTQSRGGAPFRGVM
YDYIRLEGPSIRHPDT
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaggcgggtcgtcggagcctgaagcattggggttggcttgttgggacattagca
gcaatgcttgttctggttgtttatctggttggtgaaaaaaaatacgagcagaccaccccg
aaaaccagtaccctactattaagaaaaatacttgagagatatcccagaacacaacggcag
gacttgaacattctcaaacctagtagcgggagaaactttgctagaccaccatatccaggg
atcaacatggtaacaaataatagtggccggaggatcgtcgcgagaacagaaaatccgagg
gtcagcatgctaaggagtcagagccagattaggctggataatggcttagtccaactcaca
gtttctcgtcccggcggagatgtcattggtataaaatacaaaggaagtgacaacttactt
gaacacaagaatctacgaaataatagagggtactgggatgtggtctggaacaaaccggga
gagaatttgcattatgttgataaactacaagcaacaaaatttagagttattatggcaacg
gcagaccaggttgaaatttcttttgtcaaaatatataatgtttcccagcagcatagtgcc
catgtagttcccttggatgttgacaaaaggtacataatgcgacgcggtcgttcagggttc
tatgcctatgccatattcgagtgccgtgaaggttggccggaaatgaagatggaacaaatt
agaatggtttacaagcttcaacatgagaaatttcagtatatggtattatcagacactagg
caaacattcatgccaaaagacagagaccgtaaaaacggtgagcaacttgcctatcctgaa
gccgttcgtttaaccaaaccaagtaatcgggcgtttaaaggacaggtcgatgacaagtac
cagtactcaatggaggacaaagataacaaggtccatggatggatttctatagacaattcg
ttgggattctggatgatcacacccagtgatgaattccgttctgctggacccatgaagcaa
ggcctgacatcccatgtcggtccgactaccctctcgatgtttctgagtactcactatgct
gggaagcaagctgggatagaattgaaaagaggtgaggcatggaaaaaggttttcgggcct
gtctttgtgtatctcaattcagctccaagatcaaacaattccaccggtacactttggaat
gatgccaaggagcagatggctgaagaagtcaaaagatggccatacaatttcactcaatcc
gaagactttcctccttcagatcaacggggatcagtttctggccgattaatagtacacgat
cggtacatgagtgagagccttctttcggcaagttctgcttatatgggattagctgcacca
ggagaagtgggatcatggcaaaaggaaagcaagggttaccaattctggactcgagctgac
aaacaaggtcatttcctcatcaaagatgttcgacctgggaactatagtctgtatggttgg
gttccaggcatcgttggggattacaaatatgaggctgatattgaaatcaaaccaggcagt
aaaatccatttggctaatcttacttatgagcctcaaagaaatggtcctaccttgtgggaa
attggcatccccgatcgaagtgcagctgagttctatgtaccggatccatatccaactctc
atgaacaaattgtacaacaacgatcactcggacaagtttagacaatatggcttgtggaaa
cgttatgaagaactataccccgatcatgatcttatctacaccattggcgttaacgattat
cgtcatgattggttctatgctcatgtcaccaggagtaccggaaaggaaaggtatgtagga
accacctggcaaattcgatttaaactcaacagtgtcatgagtcaaggaaattatacactc
caattagcactggcttcagctacttcttcagaaatacaggttcgatttaacgacccgagt
gtcaagcaacctcatttttcgacggggctaataggaggggacaatgccatagcaagacat
ggaattcatggtttgtattggttcttcagtgttaatgtaccaagttctctgctgcaagaa
ggaaccaatacaatctatcttactcagtcaagaggtggagcaccttttcgaggagtcatg
tatgactatattagactagaaggaccttccattagacatccagacacataa
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