Fragaria vesca (woodland strawberry): 101303970
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Entry
101303970 CDS
T02666
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101303970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fve04131
]
101303970
Membrane trafficking [BR:
fve04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
101303970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-Vps39_C
Clathrin
Vps39_1
CNH
TPR_Vps41
TPR_PEP5_VPS11
Motif
Other DBs
NCBI-GeneID:
101303970
NCBI-ProteinID:
XP_011460451
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All DBs
Position
LG3:5248033..5255876
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AA seq
1010 aa
AA seq
DB search
MAKPEPRARTVLEPLSYFNLSEQSRAPVRSLAISNVSDSECLIYLGTQFGGLFLFSLDPK
DLNAASASEPSSSPSVLQNIKFVRNVLVGNSSVDYIHVFGEIGKVLVLLDGFLFLVDSLL
LQPAKKLSFLRGISVITRRLRSSESECSNLSEGAGSSSEYTSTSQRFLKKLGGGIRANGL
KVKEAMQHRVGNHVFSVVIGKRLILLEFVLSNRVGKIDQDVDDGSFVILKEIQCIDGVMA
MVWLNDSIIVSTLNGYTLFSCVTGQSGVIFSLPDVSSPPRLKLLCKEWNVLLLVDNVGII
ANAHGQPVGGSLVFHRDPDSIGEISSYVVVAKDGKMELYHKKTGRCVQMVTFGGEGVGGP
CIVADEEDGSGKLIVVATPTKVICYRKLPSEEQIKDLLRKKNFKEAISLVEELECEGELS
KDMLSFVHAQVGFLLLFDLHFEEAVDHFLQSETMQPSEVFPFIMRDPNRWSLLVPRNRYW
GLHPPPAPLEDVVDDGLMAIQRAIFLRKAGVETVVDDAFLLKLPSRDDLLESAIKSITRY
LEVSRDKELTPSVREGVDTLLMYLYRALNNVNEMEKLVSSANSCVVEELESLLDDSGHLR
TLAFLYSSKGMSSKALAIWRILARNFSSGLWKDHSSESSSHSVGTNILSGKETAAAEASK
ILEESSDSQLVLQHLGWVAEINQVFAVQILTSEKRDNQLPPEEVIAAIDPKKVEILQRYL
QWLIEDQDSDDTQFHTIYALSLAKSAIESFEAEINSRILDPVRREETGISECSTSAIFQS
PVRERLQIFLLSSDLYDPEEVLDLIEGSELWSEKAILYKKLGQESLVLQILALKLEDSEA
AEQYCAEIGRPDVYMQLLDMYLDPQDGKEPMFKAAVRLLHNHGESLDPLQVLERLSPDMP
LQLASETILRMLRARLHHHRQGRIVHNLARALDTDASLAILEERSRHVQINDESLCDSCH
ARLGTKLFAMYPDDTIVCYKCFRRQGESTSVTGRNFKQDVLVKPGWLVTR
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcctgagccgagagctcgcactgtccttgagccactctcatacttcaacctc
tctgagcagtctcgtgccccggttaggtcccttgctatctccaatgtctcggattcggag
tgtctaatctaccttgggactcagtttggagggctgtttttgttctctctagaccctaag
gatctcaatgctgcatctgcatcggagccttcgagtagtccctcggtcctgcagaacatt
aagtttgtgaggaacgttttggttggaaattcgtcggtggattatatacatgtgtttggt
gagattgggaaggttttagtgctcttggatggctttttgtttttggttgattcacttctg
ctgcagccggcgaagaagttgagtttcctgagagggatttctgtcattacgaggaggtta
agaagtagtgaatcagagtgttcgaatttgtcagaaggtgctggcagttcatcagagtat
acgagtacaagtcagcggtttttgaaaaagttgggaggtgggataagagcaaatggattg
aaagtgaaagaagcaatgcagcaccgggtgggaaatcatgtcttttctgtcgtgattggt
aaaagattgatattgttagagtttgttttgagtaatagagtaggtaagattgatcaagac
gttgatgatgggtcttttgttattctaaaagaaattcaatgtatcgatggggttatggcc
atggtatggctcaatgattcgataattgtgagcacactcaatgggtatactttgttttct
tgtgttacgggacaaagtggtgtgatattttcgttaccagatgtttctagtccaccacgg
cttaaattgctgtgtaaagaatggaatgttctcttgttggtggacaatgttggcatcatc
gcaaatgcccatgggcagccggttggtgggagcttggtgttccatcgtgaccctgattct
attggagagatatcttcatatgtggttgttgcaaaggatggaaagatggaactgtatcat
aagaaaacaggtaggtgtgttcagatggtcacgtttggtggtgaaggggttggagggcct
tgtattgttgcggatgaggaagatggaagtggaaaacttattgtcgttgcaacacccacc
aaggttatttgctatcggaagttaccttctgaagaacaaattaaagatctgttgagaaaa
aagaacttcaaggaagccatctccttagtggaggagcttgagtgtgaaggcgaattatca
aaagatatgctgtcatttgttcatgctcaagtgggttttctcttactttttgacttgcat
tttgaggaagcagtggatcactttttgcagtctgagacaatgcagccttccgaagtattt
ccatttataatgagggatccaaatcgatggtcactactggttcctagaaaccgttattgg
ggtttgcatcctccccctgctcctctggaagatgttgtagatgatggattgatggcgatt
caaagagcaatctttctgaggaaagcaggtgtagagactgtggtagatgatgcatttctc
cttaaactgccaagccgagatgatctattggagtcagccattaagtcaattactaggtat
ttggaggtttcccgtgataaagagttgacgccatcagtgagggagggagttgacacatta
ttaatgtatttgtacagagctttaaataatgtcaatgaaatggagaagctagtatcttct
gcaaattcttgtgttgtggaggagttggaaagtctcttagatgactctgggcatttgcga
acgcttgcttttctgtattcaagtaaaggaatgagctcaaaggctcttgctatctggcgc
attttggcaagaaatttttcatccggcctttggaaagatcattcttctgagagtagttca
catagtgttggtacaaatattctctctggtaaagagactgctgcagctgaggcgtcaaag
attcttgaggagtcatctgattcacagctggttctacaacatcttggatgggttgcagaa
atcaaccaggtctttgcagttcagattttgacatcggagaaaagagacaatcagctccca
ccagaggaagtgattgcagctattgatccaaagaaagttgaaatacttcaaaggtacctt
cagtggttgattgaagaccaagattctgatgacactcagttccacacaatatatgctctc
tcacttgctaagtcagccattgaatcattcgaagcagaaattaactccagaatccttgat
cctgtaagaagagaggagacgggcatttctgaatgtagcacaagtgcaatctttcaaagt
cctgtgcgggaacgactccagatttttttactgtcttcagacttgtatgacccagaggaa
gttctcgacttgattgaaggatcagaattatggtcagagaaggctattctttacaaaaaa
ctagggcaagagtcactggtactccaaattttggccttgaagctagaagacagtgaagct
gctgagcaatattgtgctgagattggcagaccagatgtttatatgcagttacttgatatg
tatttggatccacaagatgggaaggagcctatgtttaaggctgctgttcgcctactccac
aatcatggggaatcattggatcctttgcaagtcttggagagattgtccccagatatgccc
cttcaacttgcttctgagactatattaagaatgttgagagctagacttcatcatcatcgt
caaggacgtattgtgcacaatctggcccgtgccttagataccgatgcaagtttagcaata
ttagaggaaagatcaaggcatgtgcagatcaatgatgaaagcctttgtgattcttgtcat
gcacgcctgggaactaaactttttgcaatgtaccctgatgacaccatagtctgttataag
tgttttcgtcgccagggtgaatctacttcagtcactggtcgcaactttaaacaagatgtc
ctagtgaaacctggctggcttgtgacccggtaa
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