KEGG   Fragaria vesca (woodland strawberry): 101304239
Entry
101304239         CDS       T02666                                 
Name
(RefSeq) exosome complex component RRP41-like
  KO
K11600  exosome complex component RRP41
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101304239
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fve03019]
    101304239
Messenger RNA biogenesis [BR:fve03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     101304239
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     101304239
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 101304239
NCBI-ProteinID: XP_004290319
LinkDB
Position
LG2:complement(11356706..11361001)
AA seq 241 aa
MEFVSPEGLCLDGRRPMEMRQIRAEIGVVSKADGSAMFEMGNTKVIAAVYGPREVQNRSQ
QLNANALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTNLMPRSQIDIF
VQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDLNYIEDSAGGAD
VTLGIMPKLDKVTLLQMDAKLSLDTFETVMQLAIEGCKAVADYIREILLENTKQLEYRRG
T
NT seq 726 nt   +upstreamnt  +downstreamnt
atggagttcgtcagccctgaaggtctctgtttagatggtcgccgtcccatggaaatgagg
caaattcgtgcagagattggtgttgtatccaaagccgacggttctgctatgtttgagatg
ggtaacaccaaagttattgctgctgtgtatggccctagagaggtccaaaataggagccaa
caactgaatgccaatgcattggtgcgatgtgaatacaccatggcaaattttagcactgga
gatcgaatgagaaaaccaaagggtgataggagatccacagagatatctctagttattcgc
caaactatggaagaatgcatcttgacaaacttaatgcctcggtctcagatagacattttt
gtgcaagttctccaagcagatggaggaactagatctgcatgtatcaatgctgcaaccctg
gcccttgcagatgctggaattccaatgcgggatcttgttacttcatgcagtgctgggtac
cttaatagcacacctctacttgatttaaactatatagaagatagtgctggaggtgctgat
gtcactttaggaattatgccgaagttggacaaagtgactcttcttcagatggatgctaag
ttgtcgttggatacttttgaaactgtaatgcaacttgcaattgaaggctgcaaggcagtt
gcagattatattagagaaatattattggagaatacaaagcaattggagtatcgtcgagga
acatag

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