KEGG   Fragaria vesca (woodland strawberry): 101304272
Entry
101304272         CDS       T02666                                 
Name
(RefSeq) sm-like protein LSM6A
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03018  RNA degradation
fve03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101304272
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101304272
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fve03019]
    101304272
   03041 Spliceosome [BR:fve03041]
    101304272
Messenger RNA biogenesis [BR:fve03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     101304272
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     101304272
Spliceosome [BR:fve03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    101304272
SSDB
Motif
Pfam: LSM SM-ATX Arrestin_N
Other DBs
NCBI-GeneID: 101304272
NCBI-ProteinID: XP_004296749
LinkDB
Position
LG4:9402386..9405461
AA seq 92 aa
MCGAGAERGSRTTKTPADFLKSIQGRLVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYV
NGQLKNKYGNAFIRGNNVLYIRTTKMTVADGA
NT seq 279 nt   +upstreamnt  +downstreamnt
atgtgcggagcaggagcagaaagaggatctagaaccacaaaaactccagcagattttctt
aaatcaattcaggggcgactggttgttgttaaactgaattctggtgttgactatcgaggt
atcctggcttgtcttgatgggtatatgaatatagccatggagcaaacggaggaatatgtc
aacggacagctgaaaaacaagtatggtaatgcttttattcgtggaaataatgttctctat
atcagaacaacaaagatgacagtagcagatggagcatag

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