KEGG   Fragaria vesca (woodland strawberry): 101304333
Entry
101304333         CDS       T02666                                 
Name
(RefSeq) flowering time control protein FY-like
  KO
K15542  polyadenylation factor subunit 2
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101304333
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:fve03019]
    101304333
Messenger RNA biogenesis [BR:fve03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     101304333
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_IFT140_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N NBCH_WD40 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_DCAF12 WD40_MABP1-WDR62_1st WDR54 NosL
Other DBs
NCBI-GeneID: 101304333
NCBI-ProteinID: XP_004289382
LinkDB
Position
LG1:complement(15089804..15091150)
AA seq 448 aa
MAPEYRYHPYAFPASPPVPPQADALGATYRKHTQRRTVDYSSSVVQYIQNRRSQRGAWDS
QVLQPTPAVAIDMSRPASYSHNPSNSFAAKFVHSCTNYKGRASSINRVLWTPSGGRLITG
SQNGEFTLWNGQSFYHELTLQAHDQAIRSMEWSYDDENWISGDDGGAIKYWTSNMNNVLV
NNSAHQESVRDLSFSRTNLKFCSCSDDTTIKIWDFERCEEEHRLTGHGWNVKSVDWHPTK
SLVASGGKDSVVKLWDPRRGRELCSFYDHKNWVNSVKWNQNGNWLLTASKDQVIKLYDMR
AMKELESFHGHRIEVTALAWHPIHEEYFVSGSRDGSIFHWLVGHETAQVEVPNAHNSNHN
NSVWDLQWHPIGHMLCSGSNDRTTKFWCRNRPGDKSNINVNQIFGVLNSAFAGQMTCNAP
IPFREVSPTLTLATRKEGTTIPGIRTAI
NT seq 1347 nt   +upstreamnt  +downstreamnt
atggcccctgagtatcgctaccacccctacgccttccctgccagtcctcctgttcctcct
caagctgacgctcttggtgcaacttacagaaagcacacccagagaaggacggttgattac
tctagctctgttgtccaatatatccagaatcgaaggtcgcagcgtggtgcatgggatagc
caagttttgcaacctacacctgcagtagcgatcgacatgtcgaggcctgcttcctattca
cacaacccatcaaatagctttgctgcaaagtttgtgcatagttgtacaaattacaaaggc
cgggcctcttcgattaatcgggttttatggacaccttctggggggcgtctcatcacaggc
tcccagaatggagagttcactctttggaatggtcagtcgttctaccatgaattgactctt
caggctcatgatcaagcaatcaggtctatggagtggagttatgatgatgagaattggatc
tctggtgatgatgggggtgcaataaagtattggactagtaatatgaacaatgtgctagtc
aataactctgctcaccaagaatcggttcgggatttgagcttttccaggactaatttgaag
ttctgttcatgttcggatgatactactattaagatttgggatttcgagaggtgcgaagag
gagcacagattgactggccatggttggaatgtgaagagtgttgattggcaccctacaaag
tctctagtagcttcaggtgggaaagacagtgtcgtcaagctgtgggatcctaggagagga
agagagctttgctcattttatgatcacaaaaattgggtgaattctgttaagtggaatcaa
aatggtaactggctgctaactgcttccaaggatcaagtaattaagctttatgacatgagg
gctatgaaggaactcgagtcgttccatgggcatcggattgaggtgactgctctagcttgg
catccaattcatgaagaatattttgttagtgggagtagagatggatcaattttccattgg
cttgttgggcatgaaactgcccaggttgaagttcctaatgcacacaatagcaatcacaat
aatagtgtgtgggatctgcaatggcatcctattggtcacatgctttgcagtggcagcaat
gatcgcacaactaagttttggtgtagaaataggccaggagataaatctaatatcaatgtg
aatcaaatttttggtgttctgaattctgcttttgctggtcaaatgacctgtaatgctcct
attccatttcgtgaagtatcaccaacactaacacttgctactcgaaaagaaggaaccact
attccaggtattagaactgccatttaa

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