Fragaria vesca (woodland strawberry): 101304404
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Entry
101304404 CDS
T02666
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101304404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101304404
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101304404
Spliceosome [BR:
fve03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101304404
Complex C
U5 SnRNP specific factors
101304404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_11
Motif
Other DBs
NCBI-GeneID:
101304404
NCBI-ProteinID:
XP_004304804
LinkDB
All DBs
Position
LG6:1652077..1659509
Genome browser
AA seq
2174 aa
AA seq
DB search
MTSHPNLGGGAEAHARNRQYEYTSNSSLVVTTGSRSSDTHEPTGEPESLRGRVDPKSFGD
RVCRGRPEGEIGKKRDGDGGGGSIRRKRRRVEEEKSVLSETEEGVYRPKTRETQAAYEAL
LGVIQQQLGGQPPSVVCGAADEVLAVLKNEKLRNSEKKSEIEKLLDAVSDSVFDGFVRIG
ARITDYEDGSDGGVANGDEWLDDLGVSVEFEENEDNEEGSAFDLVQDDDEEEEEEDGDLG
ERAGSGAMQFGGGIDDVEMQEANEGVRLNVQDIDAYWLQRKISEAFYKQIDAEQCQKLAE
EVLGILPQDNDMDVENKLVQCLDYKNFNLIKFLLLNRFKIFWCTRLARAEDVDERKRIEE
EMLHVGLASIVDQLHATRAGAKERQQNLERGIREEARKLKNSGGDGDMARRGHVGEDGYN
DRWNNQSQLLDLESLVRRHLEPKSCLVPDGSSRFHSRKGVEEVHVPALKPKPFGADEKLV
KICDMPEWARSAFKGMTQLNRVQSKLYETAFQKADNILLCAPTGAGKTNVAVLTILQQLA
LNMNEDGSINHNAYKIVYVAPMKALVAEVVGNLSSRLQEYGVTVRELSGDQTLTRHQIEE
TQIIVTTPEKWDIITRKSGDRTYTELVKLLIIDEIHLLHDNRGPVLESIVARTLRQMKTT
SDHIRLVGLSATLPNYEDVAKFLRVDFDKGLFHFDNSYRPVPLSQQYVGITIKKPLQRFQ
LMNEICYEKVMAVAGKHQVLIFVHSRAETAKTARALRDTALANDTLGKFLKEDSASREIL
HTHTDLVQSNHLKDLLPYGFAIHHAGLNRADRQLVEDLFADGHVQVLVSTATLAWGVNLP
AHTVIIKGTQIYDSEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIITGHTELRYYLSM
MNQQFLIESQFVSRLADQLNAEIVLGTVQNAQEACDWLGYTYLYIRMSKNPMLYGLEANV
LTRDPNLEERRADLIHSAATILEKNNLIKYDRRSGYFQSTDLGRIASHYYITHGTISTYN
EHLKPTMRDIELYQLFSLSEEFKYVTVRQDEKMELVKLLERVPIPVKESLEDPSCKINVL
LQAYISQLKFEGFSLTQDMVYITQSAGRLVRALFEVALKRGWAQLADKTLNLCKMVSKRM
WSVQIPLHQFHGITKDILVKLEKKNLAWERYYDLSSQELGELIKMPKMGRTLHKFIHQFP
KLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVLVEDNDGEHILHHEYFLLK
KQCIDEDHTLNFTVQIYEPLPPHYFIRVVSDRWLGSQTVLPVSFRYLILPEKYPPPTELL
DLQPLPVTALRNPLYESLYQDFKQFNPVQTQVFNVLYNSDDNALVAAPTGSGKTICAEFA
VLRNHQKASESGMRVVYIAPVEGLAKERHTDWKKKFGPKGLNLLVVELTGETATDLKLLE
KGQIIISTPEKWDALSRRWKQRSHVQQVSLLIIDELHLIGGQGGHTLEAIVSRMRCMASE
LENKIRIVALSSSLANANDLGGWIGATSHGLFNFPPGVRPVPEIHIQGVDIANYEARMQA
MTKPTYTAIVQHAKNGKPALVYVPTRKHVQQTAQDLVNYSNAESGGNTSFLLRSLNEIEP
FLEKISSDKLRDSLRHGVGFLHEGLTTDDQEIVSLLFEAEYIQSCVMSSSLCWGVPLSAH
LVVVMGTQYFDGRENLHTDYPVPDLLQMIGHACRPKKDNSGKCVILCHAPRKEYYKKFLY
EALPVESHLHHYLHDNINAEVVAQVIGNHEGALNYLTWTFFYRRLAQNPNYYNLQGVTHA
HISEYLSELVENTLSDLETSKCVAIEDGDVSALNLGIIASYYYISYSTMERFSSSLTSTT
KMKGLLEILAHASEYSQLSVQPGEEEVIRRLINQQRFSFENPNCADPHVKANALLQAHFA
RHRVLGNLLMDQREVLLSASRLLHAMVDVIASNGWLNLSLLAMEVSQMITQGMWDRDSTL
LQLPHFTSELAKRCQEFPGKNIERVSYLVDMEFDERRELLQELLQMSDIQLEDIEQFCKR
FPSIDMTFKVMESENVRAGEEITLQVDMDREQVGPVDAQVGPVDAPRYPRTKEEGWWLVV
GDTKTNSLLAIKKVLPLLKKAKIQLRFSAPAEAGKKTYTLYFMCDSYLGCDEEHNFTVDV
KEAANLGEDIEMGE
NT seq
6525 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcacatcccaacttgggcggcggtgcggaggcgcacgcccggaacaggcagtac
gagtacacgtccaactccagcctggtggtgaccaccggctctcgatcaagtgacacgcac
gagcccaccggcgagccggagtcgctgcgggggagggtagaccctaagagcttcggcgat
agggtttgcaggggaagaccggagggtgagattgggaagaagcgcgacggtgatggtgga
ggtggatcaattcgccggaaacggcgtcgtgttgaggaggagaagagtgtgcttagtgag
acggaggaaggtgtgtatcggcctaagacgagggagacgcaggcggcgtatgaggcgttg
ctcggtgtgattcagcagcagctggggggccagccgccgagtgtagtctgcggcgcggcc
gatgaggttttggctgtgttgaagaatgagaagttgaggaattccgagaagaaatcggag
attgagaagctgttggatgctgtatcggattcggtgtttgatggttttgtgaggattggg
gctcggattactgattacgaagatgggagtgatggtggtgtggcgaatggggatgaatgg
cttgatgatttgggggtttcggttgagtttgaagagaatgaggacaatgaggaggggagt
gcttttgatttggtgcaggatgatgatgaggaagaggaagaggaggatggtgatttgggg
gaaagagccgggtccggggcaatgcaattcggtggggggattgatgatgtcgaaatgcag
gaagcgaatgaaggtgtgaggcttaatgtgcaggacattgatgcttattggcttcagagg
aagatttcggaagctttttataagcagattgatgcagagcagtgccagaagcttgctgag
gaggttcttgggatactaccccaagataatgatatggatgttgaaaataagctagtgcaa
tgcctagattataagaatttcaacctgatcaagtttctgttgctaaaccggttcaagatt
ttctggtgcacccgtttggcacgagctgaagatgtggatgagaggaagagaatcgaggag
gagatgttgcatgtggggctggcatcgattgttgaccagttgcatgccacaagggctggt
gcaaaggagaggcaacagaatttggagaggggtattagagaagaggctcggaagttgaag
aacagtggtggagatggggacatggctaggaggggacatgttggtgaagatggttataat
gatcggtggaataatcagtctcagctgcttgatcttgaaagccttgtccgtagacatttg
gaaccgaagagttgcctggttccggatggatcttccagatttcattcaagaaagggagtt
gaagaagttcatgtgccggcattgaagcctaaaccgtttggtgctgatgagaaacttgta
aaaatatgtgatatgccagaatgggctcgatcagcattcaaaggaatgactcagttgaac
agggtacagagtaaactttatgagactgcttttcagaaagcagacaatattctcttatgt
gctcctactggggcagggaaaactaatgtagctgttctcactatcctccagcagttggca
cttaacatgaatgaagatggttcaattaaccacaatgcttataagattgtatatgttgct
cctatgaaagctcttgttgctgaagttgttggcaacttatctagtcgtttgcaagagtat
ggtgtcacggtgagggagctaagtggtgaccagacactgactcgccatcaaattgaagag
actcaaatcattgtcaccactcctgagaagtgggatatcattaccagaaagtcaggagat
cgtacttacacagaactcgtgaagcttctaatcattgatgaaattcatcttctccatgac
aatagaggtcctgttcttgaaagcatcgttgctagaactctgaggcagatgaagaccact
agtgatcatattcggttggtgggattatctgccacactccctaactatgaagatgtagcc
aagtttctacgtgttgattttgataagggcctgtttcattttgacaatagttacaggcct
gtccctctttctcaacagtacgttggaatcacaataaagaagccattgcagaggtttcaa
ttgatgaatgaaatctgctatgagaaggtgatggctgtagctggaaaacaccaagttctt
atatttgtccactccagggcagaaacagccaagactgctcgtgctttacgagatactgca
cttgctaatgacacccttggtaagtttttgaaagaagacagtgcaagcagggaaattctt
cacactcatactgacttggtccaaagcaatcatctcaaagatcttttaccatatggtttt
gctattcaccatgctgggttgaatagagctgaccgccagctggttgaggatctctttgct
gatgggcatgttcaagttctggtctcaactgcaacacttgcttggggtgtgaatctgcca
gctcatactgttataatcaaagggacccagatttatgattcagaaaagggagcatggact
gaactaagtcctcttgatgttatgcagatgttgggtcgtgcaggaagacctcagtatgat
tcatatggagaagggataatcattacagggcacactgaactgcggtactatctttctatg
atgaaccaacaatttcttattgaaagtcaatttgtgtccagattggcagatcagttgaat
gctgaaattgttcttggaactgttcaaaatgctcaagaagcttgtgattggttgggatac
acttacctgtacattcgcatgtcaaagaatcccatgctctatggtctggaagctaatgtt
ctcaccagagatcctaacctggaggagaggcgagctgatcttatccattctgctgcaacc
atcttggagaagaacaatttgatcaagtatgatagaagaagtggatatttccagtccacg
gacttgggtcgcattgctagccattactatataactcatgggacaatatcgacatataat
gagcatttgaagccaactatgagggatattgagctttatcaattgttctcactcagtgaa
gaatttaagtatgtcactgtgcggcaggatgaaaagatggaactagtaaaactattggaa
cgtgttcccattccggtcaaggagagcttggaagatcccagttgcaagattaacgttctg
ctgcaagcatatatttcacagctgaagtttgaagggttctcattgactcaggatatggtt
tacattacacagagtgctgggcgtcttgtacgggctcttttcgaggtcgctttgaaacga
ggatgggctcaacttgcagacaagactttgaacttgtgtaaaatggttagcaagaggatg
tggagtgtccaaataccacttcaccagttccatggaataacaaaagatattttggtgaag
ttggagaagaagaatttggcctgggaaaggtattatgacctctcttcacaggagctaggg
gagcttataaagatgccaaagatgggtagaacacttcataagttcatccaccagttcccc
aaattaaaccttgcagcacatgtgcagccaattactcgaactgtattgagggttgagctt
actataacccctgactttcaatgggaggacaaagttcatggctacgtggagccattttgg
gtactcgtggaggataatgatggggaacatattcttcatcatgaatattttttgctgaag
aagcagtgtattgatgaggatcatactttgaacttcactgttcaaatttacgaacccctc
ccacctcattacttcattcgagttgtatctgataggtggcttgggtcgcagactgtttta
cctgtttctttcagatacctcatcttacctgaaaagtatcctccaccaacggagttattg
gacctgcaaccacttcctgtgaccgcattaaggaatccgctctatgaatctttgtatcaa
gatttcaagcagtttaatcctgtccagactcaggtcttcaatgttttgtataattctgat
gacaatgccttggttgctgcaccgacagggagtgggaagaccatatgcgcggagtttgcg
gtattgaggaatcatcaaaaggcctctgaaagtggcatgcgcgttgtgtatattgcccct
gttgaaggtcttgccaaggaaaggcacactgactggaagaagaagtttgggccaaaaggt
cttaatctgcttgttgttgagttaacaggggaaacagccacagatttaaagctacttgaa
aaaggtcagattataatcagtactccagagaaatgggacgctttatctcggcgatggaaa
cagaggtcgcatgttcaacaagttagtcttcttattatagatgaactacacttgattggt
ggtcagggtggtcacacattggaggcaatagtctctaggatgagatgcatggcaagtgaa
cttgagaacaagattcgtattgtagcgctgtcaagttcgcttgcaaatgccaacgatctt
ggaggatggataggagctacctctcatggccttttcaattttcctcccggtgtgcgccca
gtgccagaaatacacattcagggggttgatatagctaattatgaagcaagaatgcaagct
atgacaaaaccaacatacactgcaattgttcaacatgccaagaatggaaaaccggctctt
gtgtatgttcctacaaggaaacatgtccaacaaacagctcaggatctggtaaattactcg
aatgcagaaagtggtgggaacacctcatttctgttgcggtctctaaacgagatagagcct
ttccttgagaagattagcagtgataagttgcgagactctttgcggcatggagtgggattc
ttgcacgaggggctaaccactgacgatcaagagattgtgtcattactttttgaagctgag
tatattcaatcgtgtgtcatgagcagttcattgtgttggggagtgccattgtcagcacat
ttggtggttgtgatgggaactcaatattttgatggccgggaaaatcttcacactgattac
ccagttcctgatctcctacagatgattggtcatgcctgtcgcccaaagaaagacaattct
ggaaaatgtgtcatcctctgccatgctccgcgtaaagaatactacaaaaagttcttatac
gaagcattgcctgttgaaagccatttgcaccattacctgcatgacaatataaatgcagaa
gttgtagctcaagtaatcggaaaccatgaaggggctctcaattaccttacatggactttt
ttctacaggagactcgcacaaaatcccaactattataatcttcagggagttacacatgcg
catatttctgagtacctttcagagcttgttgagaatacactgagtgacctggaaacaagc
aagtgtgttgctatcgaggacggggatgtttctgccttgaatcttgggataatagcttca
tattattatatcagctattctacaatggagcgtttcagttcttccttaacttcaacaacg
aagatgaagggtcttcttgagattctagctcatgcttcagagtattcacagctttctgta
caacctggagaggaagaggtgattcgaaggttgattaaccagcagagattttcctttgag
aatcctaactgcgcagatcctcatgtcaaagcaaatgctcttcttcaggctcattttgca
aggcatcgtgtgctggggaacctattaatggaccagcgtgaggttctcctttctgcaagt
aggttgcttcacgcaatggttgatgtcattgccagcaatggatggctaaacctttctctt
ttagcaatggaagtcagccagatgatcactcaggggatgtgggatcgtgactcgacactt
ctacagcttcctcacttcacaagtgagctggcaaagagatgccaagagtttcctgggaag
aatatagagagggtatcttatttggtagacatggagtttgatgagaggcgagaactactt
caggagctactccagatgtcagatatacaactggaggatattgagcaattttgcaaacga
tttcccagcattgatatgacatttaaggtgatggagagcgagaatgtaagagctggggag
gaaatcactttgcaagttgatatggaccgtgaacaggttggtcctgttgatgcacaggtt
ggtcctgttgatgcaccgaggtatcccaggacaaaagaagaggggtggtggctagtagtg
ggagataccaagactaactcactgcttgccatcaagaaagttctgccgctactaaagaag
gcaaagatccagcttagattttcggctcctgcagaagctggaaagaagacatatacgctg
tatttcatgtgtgattcatatttggggtgtgatgaagaacataacttcactgttgatgtt
aaagaagcagcaaaccttggtgaagacattgagatgggagaatga
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integrated database retrieval system
