Fragaria vesca (woodland strawberry): 101305114 Help Entry 101305114         CDS       T02666                                  Name (RefSeq) uncharacterized LOC101305114   KO K19026   spatacsin Organism fve  Fragaria vesca (woodland strawberry) Brite KEGG Orthology (KO) [BR:fve00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:fve03400]     101305114 DNA repair and recombination proteins [BR:fve03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      101305114 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spatacsin_C DUF6839 Motif Other DBs NCBI-GeneID:  101305114 NCBI-ProteinID:  XP_004289254 LinkDB All DBs Position LG1:11813151..11832289 Genome browser AA seq 3230 aa AA seqDB search MDLAVGDKGPAVLQLLKWGSSQPQLNLSEFREAYISPTRQLLLLLSYQCEALLFPLITGV STGSNNLESNFGESLKSTETEHGRSDLTRDDLPCTSGSVGDVDNDLSFGGDSLRSESNPF VGDVNSLAWGICEDTYNQHQDSLFRELLFVCGKQGIMVHAFVESTGNTTITSDAREGRYR QGRWVEWGPSASVVGNMELEEPTSLSSEATGNSEFNKANGKSESPHACNVDGNDEVSKSV ASKRWLQSFLTKVENVEDNGKILTRFPEKSSLPSSARIVSFSLFDSSSPILEYLSKNDSA SDKACGQERLYESENDKSLNLDITSSDPHFKSETLSNLFGVGMDSVYKCCRVFSSNSHYF IGFVFTQVDPVIVNTSDDSGKSKKNNVLLISRLDDAGIHWVSTVKPDESPHIGSVGQWTD FHFSDKLLVCLNACGLIVFYAAMSGEYVAHIDILETLGINTGLHLQKQEAVSTDYDEHIS QVDDIRNKSVLQHIDYSGSRVFKKLIAASHTTLVAAIDDYGVIYVISAGEYLPDKYNTNA KLLPHIQHLELGILAGWEVGGSHIGHQREYSDIPDSWNSIIPSMMKGRSFLDDFGEQVLQ RNKELYLKQEGTGYRSEVTDQKFDESHRKGHLMRKIFVPSYRFSEDDIICFSPLGITQLM RHQNSRDQRGSQMVHINMHAESAVCDDSFLNTGCKKFYLHEKEEYFIGEAVGCTFQGCIY LVTISGLSVVLPSIAVSSNFLPVEVIGCRQLCLNSGIGYQGKAIRGDKESKQPWSPWNVE ILDRVLLYEGAEEADRLCLENGWDLKISRMRRLQLSLDYLKFDEIERSLEKLVGVNLAEE GVLRLLFAAVYLMLRKVGNDNEVSAASRLLAVATSFATKMIRKYWLLEHRKRKDAYESGR TQLLSLPPVSPVKIEDEMANSRRLREMAHFLEIIRNLQSRLGSKYKRPGQELVDSGEASR LVETDLLQNESQLSIVSVDAISLETSKQHEVSFPVSTSGLNYNENLALTPVDSKVPLDPE DLSEVSALVPRGGLLEKKIFPLENPKEMIARWKIDNLDLRAVVSDALLSGRLPLAVLQLH LHRSRDSFSGKEPHDTFTEVRDVGRAIAYDLFLKGESGLAVATLQRLGEDVETSLKQLLF GTVRRSLRVKITEEMNKYGYLGSYEWKILDRISLIERLYPSSSFWKTLHGRQKEFTQIPA SSSLPKRYYLRLLDSALVNNFTIECDEIDGVVFGSWTNVNENPSGPMVDEDNAYAGYWAA AAVWFSFYDQRSVDRIVLDQSSFMGVNVLWESQLEYHVCHNDWEEVSRLLDLIPAHVLVV GSLQINLDGLQPASTFECNRGSDYSDYLCYVEELDAVCMDVPEIKVFRFSCDGMCSIWLK MLMEEKLARKLIFSKEYWEGTADILPLLARSGFITSKYEITSEDDNIEDKSVLKFPDGGT IQALHKLLIHHCSQYNLPNLLDLYLDQHELVTDSNSVRSLLEAAGDCEWARWLLLSRVKG CEYEASFSNSRAMLSHNLVPDSNLHVQEMDEIIRTVDDIAEGGGELAALATLMYASAPFQ SCLSSGSVKRHSSTSAQCTLENLRPTLQRFPTLWHTFVSACFGQDTTSNLVGPKAKNGLS DYLSWRDDIFFSSGRDTSLLQMLPCWFPKAVRRLIQLYAQGPLGWQSIPGLPVGESLLHR DIDFVLNTDDDVEISALSWEATIQKHIEEELYSSALEGNALGLEHHLHRGRALAAFNHFL GLRVQKLKSEGKGQIQANVQADVQTLLEPITESEESLLSSVMPLAIMHFEDSVLVASCAF LLELFGYSASMLRIDIAALKRMSYFYKSSENTDNLRKILTKGSAFHAVGHESDIMESLAR ALADEYLQQDSARMTKQKGTPSLAVVKQPSRALMLFLEFLEKASLPSMVDGRTCGSWLLS GDGDGIELRSQQKAASHRWNLVTIFCQMHHLPLSTRYLSVLARDNDWVGFLSEAQIGGYP FDTVVQVASKDFCDPRLKIHISTVLKAMQSRRKASSSTTETIEKRSEASFTDESICVPVE LFRILAECEKQKNPGEAILMKAKELSWSILAMIASCFSDVSAISCLTVWLEITAARETSS IKVNDIASRIANNVGAAVEATNALQAGGSKSLTFHYSRQNAKRRRLLEPNLGEPSATTMS GILGSPVGVKIFDQGTISEDERNIELGGNMILSTDSDEASVSLSKMVSVLCEQHLFLPLL RAFEMFLPSCSLVPFIRALQAFSQMRLSEASAHLGSFSARIKEDSTRLQTNVGRDMHIGA SWISSTAIKAADAMLLTCPSPYEKRCLLKLLAATDFGDGGPAATYYRRLHWKINLAEPLL RKDDILQLGDETLDDGALATALESNRHWEQARNWARQLEASAGVWKSAVHHVTETQAESM VAEWKEFLWDVPEERIALWGHCQTLFIRYSFPALQAGLFFLKYAEALEKDLPARELHELL LLSLQWLSGMITQSNPVYPLHLIREIETRVWLLAVESEAQGKSEGDFNLSSSIRDPIHKN SSSIIDRTASIITKMDNHIGTFKNRTVEKHDARENNQAYHRNQVSDVSFPTTTAGSTKTK RRAKGYVPLRRPVVDSPEKSADPDEGSNSLNVRHELQSQDENLKSDMSFSRWEERVGPAE LERAVLSLLEFGQIAAAKQLQHKLSPVKVPSEILLVDSALKLAAMSTPSKTVSLAMLDEE VRSVIQSHHIPTQQHEVDTLQVLENLATIFTEGCGRGLCKRIIAVNKAACMLGLPFPEAF AKQPIELLQLLSLKAQESFEEAHLLVSTHSMPAASIAQILSESFLKGLLAAHRGGYMDSQ KEEGPAPLLWRFSDFLKWAELCPSEQEIGHALMRLVITGQEVPHACEVELLILSHHFYKL SSCLDGVDVLVALAATRVEAYVSEGDFSCLARLITGVGNFHALNFILGILIENGQLDLLL QKYSAAADTNAGTAEAVRGFRMAVLTSLKHFNPNDLDAFAMVYNHFDMKHETAALLESRA EQSSEQWFIRYDKDQNEDLLDSMRYYIEAAEVHKSIDAGNKTRRACAQASLLSLQIRMPD FHWLYRSETNARRALVEQSRFQEALIVAEAYGLNQPSEWALVLWNQMLKPEVLEDFVAEF VAVLPLQPSMLVDLAKFYRAEVAARGDQSQFSVWLTGGGLPAEWAKYLGRSFRCLLKRTR DLKLRLQLATVATGFGDVIDACTKALDRVPENVGPLVLRKGHGGAYLPLM NT seq 9693 nt NT seq  +upstreamnt  +downstreamnt atggatttggctgtgggtgataaaggacctgcagtacttcagttgctcaaatggggctct tctcagccccagctaaacttgtcggaatttcgtgaagcttacatttcacctacaagacag ttattattgttgctttcatatcagtgtgaggctttattgtttcctctgattacaggggtc tctacaggtagtaacaatttggagagtaattttggtgaaagtcttaaaagtacagagaca gagcatggtaggtcagatttaacaagggatgatttgccgtgcacatctggatcagtagga gatgttgataatgatttgagttttggaggggatagtttaagatctgaaagtaacccattt gttggtgatgttaactctctggcttggggcatttgtgaggacacttataatcagcaccag gattctttatttagagaacttttgtttgtttgtggcaagcaaggtattatggtccatgct tttgttgaatccaccggaaacactacaattaccagcgatgcacgggaaggtaggtatagg caagggaggtgggttgagtgggggccttctgcttctgtagttggaaatatggagttggag gaacctacaagcttgagttctgaagccactggaaatagtgagtttaacaaagccaatgga aaaagtgaaagtccccatgcttgtaatgtggatgggaatgatgaggtgtccaaaagtgtt gcttctaagagatggttgcaatcttttttgactaaagttgaaaatgttgaagataatggt aagatattgaccagatttccggaaaagtcatcgttacctagctctgcaagaattgtttca tttagtttatttgatagtagttcgccaattttggagtacctttcaaaaaatgattctgca tcagataaggcatgtggtcaggaaagactttatgagtcggagaatgataaatctctaaat ttagacataacttcatctgatccacatttcaagtctgaaactctgtccaatctttttggt gttggaatggatagtgtatacaaatgctgcagagtgttctcaagcaattcacattacttc attggatttgttttcacacaggttgatccggtaattgtcaatactagtgatgatagtgga aaaagcaagaagaataatgtactgcttatttctagattagacgacgcgggaattcattgg gtttccacagtgaagcctgatgaaagtccacatatcggctcagtaggacaatggacagac ttccacttttccgataaacttcttgtttgtcttaatgcttgtgggctaattgtattttat gcagcaatgtcaggtgagtatgttgcacatatagatattttagagactttaggaatcaac actgggttgcatttgcagaagcaggaagcagtttccacagattatgatgagcatattagt caagttgatgacattcggaacaaatcagttttgcaacatatagattattctggcagtaga gtttttaaaaagttgattgctgcttcacataccaccctagtagctgctatagatgattat ggtgtaatatatgtaatttctgctggtgaatatctaccggacaaatataatacaaatgcg aaactacttccacatattcagcatttggaacttggaatattggctggttgggaagttggc ggttctcatataggccaccaaagagaatattctgacatacctgattcgtggaattccatc attccatccatgatgaaaggaagatccttcctggatgattttggggaacaagtgcttcag agaaacaaagagttatacctcaaacaagaagggactggatacaggtcagaagtaactgat cagaagtttgatgagtctcacagaaagggacaccttatgcgcaagatctttgttcccagt tatagatttagtgaggatgatatcatctgtttttctccattgggaattactcagcttatg agacaccaaaattcacgtgatcagaggggttctcaaatggttcatatcaatatgcatgca gaatcagcagtatgtgatgacagctttttgaataccggttgtaaaaagttttatctccat gagaaagaagaatacttcatcggtgaggcagtgggttgcacattccagggatgcatttat ttggttacgataagtggactttcggtggtgcttccctctattgcagtttcatcaaatttt cttcctgtagaagttattggatgtcgacagttgtgtctcaattcaggcattgggtatcaa gggaaggctataaggggagataaagaatctaaacagccgtggtcaccttggaatgttgaa attctggatagagttctcctatatgaaggtgctgaagaagccgatcgcttatgcttggag aacggttgggacctgaaaatatctcggatgcgtcggctgcagttgtcactggattacttg aaatttgatgagatagagcgatcattagaaaagcttgtgggtgtcaatttggcagaagag ggtgtgcttagattgctctttgcggctgtttatctgatgcttcgtaaagttggcaatgat aatgaggtttctgctgcatcaaggcttcttgcagtggccacttcttttgcgacgaaaatg attcgcaagtattggttgctagaacataggaaaaggaaagatgcatacgaatctggtagg acccaacttctatctcttccaccagtttcaccggtgaagatagaagatgaaatggcaaat tcaaggaggcttcgtgagatggctcactttttggagataattcgaaatctccaatctcga cttggttcaaagtataagaggccaggccaagaactggtggatagtggggaagcatcaaga ttggttgagactgatttattgcagaatgaatcgcagttatcaattgtatctgtggacgct atatctttggagacatccaaacagcatgaagtttctttccctgtatcgacatcaggcctt aactataatgagaatcttgctttaacacctgtggattctaaagtccctttggacccagag gatttgagtgaagtgtctgctcttgtgccacgaggagggctcttagagaagaaaattttt cccttagagaatcccaaggagatgattgctcgttggaagatagataatctagaccttagg gcagtagtcagtgatgctttactctctggtcgtctgcccttagcagttcttcaactacat cttcatcgttcaagagattcattttctggaaaggagcctcatgatactttcactgaagtc cgtgatgttggtagagctattgcttatgatctgtttttgaagggtgagtctggacttgct gtggccacattgcaaaggcttggagaggatgtagaaaccagccttaagcagttattattc ggcactgtgagaagatctcttcgtgtgaaaatcactgaggagatgaataaatatggttac ctgggatcgtatgagtggaagatattggataggatatcactcattgagaggctatacccc agcagtagtttctggaaaacgcttcatggacggcagaaagaattcactcaaattccagca agttccagtttgcccaagagatattatttgcgcctattggattcagctctagtcaacaat tttaccatcgagtgtgatgaaattgatggagttgtttttggttcatggacaaatgtaaat gaaaatccttctggtcctatggttgatgaagataatgcttacgctggttactgggctgct gctgctgtatggtttagtttctatgatcaaagaagcgttgatcgaatcgtcttggaccag tcatctttcatgggcgtgaatgtattgtgggaatcacagcttgagtaccatgtatgccac aatgactgggaggaagtttctagactcctggaccttattcctgcacatgttcttgtcgtt ggaagcctccaaatcaatttggatgggctacagcctgcttcaacttttgaatgcaataga ggttctgactacagtgattacctctgctatgttgaagaactggatgctgtttgcatggat gtaccagagatcaaagttttcaggttttcgtgtgatggtatgtgctccatatggttaaag atgctgatggaagaaaaacttgcaaggaaactaattttctcaaaggaatattgggaaggc acagcagatatacttcctcttcttgctcgttctggcttcattactagcaagtatgagatc acttcagaggatgataatattgaggataaatcagtcctgaaatttccggatggtggtacc atacaggctttacataaactacttattcatcattgctcacagtacaacttgccaaacctt ctggacctttaccttgaccagcacgagttggtaacagatagtaattcagttcgttcactt ctggaagccgcaggagattgtgaatgggcacgatggttgctcctctctagagttaaaggg tgtgagtatgaagcatcattttccaattctcgcgcgatgctttcacacaatctagttccg gatagtaacctccatgttcaggagatggatgaaataattcgtactgttgatgacattgca gaaggagggggagaattggcagctttggcaaccttaatgtatgcctctgccccctttcaa agttgtctaagtagtggtagtgtaaagaggcatagtagtacatcagcccagtgcacactg gagaatctcaggcccacgcttcagcgtttccctacactatggcacacatttgtatcagca tgtttcgggcaagatacaacttccaatcttgtggggcctaaagcaaagaatggtttatca gattatttaagttggcgtgatgacatattcttctcttctggacgtgatacttcacttctg caaatgcttccatgctggtttccgaaggctgtgcggaggttgattcagctttatgctcag ggtcctcttggatggcaatcaataccaggtctgcctgtgggagaaagtctgctgcacaga gatatagattttgttctaaacactgatgacgatgtagaaatcagtgccctatcctgggaa gcaactatccaaaaacacattgaggaggaactctatagttctgcacttgagggaaatgcg cttgggcttgaacaccatttacaccgtggacgtgctttagctgcttttaatcattttctt ggtttgagagttcaaaaattgaaatcagaaggaaaaggacaaatacaagcaaatgttcaa gcagatgttcagacacttcttgaacctataacagaaagtgaagagtctcttctttcatca gtcatgccacttgcaattatgcattttgaggattctgtgctggttgcttcgtgcgctttt ctcctggagctttttgggtattctgccagcatgctccgaatagacattgctgctctgaaa cggatgtcttatttttacaaatcaagtgaaaatactgacaacttaaggaaaattttgaca aaagggtctgcatttcatgcagttggccatgaaagtgatataatggagtctctcgctcga gctctagccgatgagtatctgcagcaggatagtgccagaatgactaagcaaaagggtact ccaagtttagctgtggttaagcaaccttcacgagctcttatgcttttcttagaattcttg gaaaaggctagccttccttcaatggtggatgggagaacatgtgggtcttggctgttgagt ggtgatggtgatggaatcgagttgagatctcaacagaaagctgcaagccatcgctggaac ttagttacaattttctgccagatgcaccaccttcccttgagcactagatatctttctgta ctggcaagagacaatgattgggttgggtttttgtcagaagctcagattggaggatatcct ttcgacacagtggtccaagtggcatcaaaggacttttgtgatccacgtcttaaaattcat atttcgacagttctgaaagccatgcagtcaagaagaaaagctagctcttcaacaacagaa actatagagaaaaggagtgaagcttcctttactgatgaaagcatttgtgtcccagttgaa ctttttagaatattagcagaatgtgaaaagcagaaaaaccctggagaggccattttgatg aaagcaaaggagttatcttggtcaattttggctatgattgcatcctgcttttcagacgtg tctgcaatatcttgcctaacagtctggctggaaatcactgctgcaagggaaacttcatct atcaaggtgaatgatattgcttccagaattgcaaataatgttggagcagctgtggaagct actaatgctctgcaagcaggagggagtaaatcccttacatttcattacagtaggcagaat gcaaaaaggaggcggctcctggagcccaacttaggagaaccctcagccactacaatgtct ggaattctgggttcacctgtgggtgtgaaaatatttgaccagggaactatttctgaagac gaaagaaatatagaacttggcggaaatatgattctctcaactgattctgatgaagcgtct gtttcactgtcgaagatggtttcagtgctttgtgagcagcacctgttcctgcctttgtta agagcatttgaaatgttccttccttcatgttctcttgtacctttcatacgtgcacttcag gcattttcacaaatgcgcctttctgaagcatcagcacacttaggttcattttctgcccga atcaaagaagattcaactcgcttacagacaaatgtaggaagagatatgcacattggtgca tcatggataagctctacggctattaaagctgcggatgccatgcttttgacttgtccatct ccttatgaaaagagatgcttactaaaacttcttgctgccactgattttggcgatggaggt cctgcagctacttattatcggcggcttcattggaaaattaatctagcggagccactatta cgcaaggatgatattttgcaactgggggatgaaactctagatgatggtgcacttgcaaca gcattggaaagtaataggcactgggagcaagcacgcaactgggccagacagttggaggcc agtgctggagtttggaaatctgctgttcatcatgtaactgaaactcaggctgaatctatg gtagctgagtggaaggaatttctttgggatgtccctgaggagagaatcgccttatgggga cattgccaaacgctgtttatcagatattccttccctgctttacaggctgggctatttttc cttaagtatgcagaagctctggaaaaagatcttccagctagggagcttcatgagctgttg ctgctttcactacaatggttaagcggaatgattactcagtccaatccagtttatccactt catctgattcgggaaatcgagactagagtatggctcttggcggtagaatcagaggcacag ggtaagagtgaaggagacttcaatctaagcagttccatccgtgatcctattcacaaaaat agctccagtattattgacagaacagcaagtatcataacaaaaatggacaatcacatcggt acatttaagaatagaactgtagagaaacatgatgcaagggaaaataaccaggcatatcac aggaaccaagtatcagatgttagctttccaaccaccactgcagggagtacaaagactaag cgaagggcaaaaggctatgtgccattacgacggccagtagtggactcaccagaaaaaagc gctgatcctgatgagggttctaattctcttaatgttagacatgaattgcagtctcaggat gaaaacttaaaatcagacatgtccttttcacggtgggaggaaagggttggacctgcagag ctggaaagggctgttctttctttattagaatttggacaaatagctgctgcaaagcaactc cagcataagctgtctccagtaaaagtaccatctgaaattttacttgtggattccgcactg aagcttgctgctatgtcaactccaagtaaaacagtatctttagcaatgcttgatgaagaa gtacgttcggttattcagtcccaccatattccgacccagcaacatgaagttgatacactg caggttttggagaatctagcaaccatttttactgaaggttgcggacgtggactatgcaag aggataatagcagtaaacaaagcagcatgtatgttaggtcttccatttccggaggcattt gccaagcagccaattgaattactacagctgctttcccttaaagcacaagaatcatttgag gaggcacatctccttgtcagtactcattcaatgcccgcagccagtattgctcagattctt tcagaatcctttctaaagggcttattggcagctcatcgtgggggatatatggattctcaa aaagaagaaggacctgctcccttactctggagattttcagacttcttaaagtgggcagag ctttgtccttctgaacaagaaattgggcatgcactaatgcgcttggttattactggacaa gaagtaccacatgcttgtgaggttgagcttctaattttgtcccaccacttctacaaacta tcatcttgccttgatggagttgatgttcttgtagcccttgcagctactagagtagaagct tatgtgtctgagggtgatttttcatgtttggcccgtctgataactggagtaggaaacttc cacgccctgaatttcattcttggaattcttattgaaaatggccaactggatctccttctt cagaagtattcagctgccgcagacacgaatgctggcactgctgaggctgtccggggattt cggatggctgttctgacatcattgaagcattttaatcccaatgaccttgatgcttttgct atggtctacaatcactttgacatgaaacatgaaacggctgctcttttggagtcacgagca gagcagtcatcagagcagtggttcattcgttatgacaaggatcagaatgaggaccttcta gactccatgcgttattacattgaagctgctgaagttcacaaatccattgatgctggcaac aaaacacgcagagcatgtgctcaggcctccctcttgtctcttcagattcggatgccagat ttccactggctgtaccgatccgaaaccaatgccaggcgtgccctagtggagcagtctcgt ttccaagaggccctcattgttgctgaagcctatggtcttaaccagccaagtgagtgggcc ttggtactttggaaccagatgctcaaaccagaagttctggaagactttgtggctgaattt gtggctgttcttcctctccagccctcgatgctcgttgacctagcaaagttctatagggct gaggtggcagcgagaggggaccaatcccagttttcagtttggttaactgggggagggttg ccagcggaatgggcaaaatatctggggaggtcgtttagatgcttgttgaaaaggactaga gatttgaagttgcggttgcagttggctactgtggcaactggttttggagatgtcattgat gcatgtacaaaggcgttagatagggtccctgagaatgttggacctcttgtcctgcggaaa ggccacggtggtgcttatctaccactcatgtga

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