Fragaria vesca (woodland strawberry): 101305191
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Entry
101305191 CDS
T02666
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101305191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fve03021
]
101305191
03019 Messenger RNA biogenesis [BR:
fve03019
]
101305191
Transcription machinery [BR:
fve03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101305191
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101305191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
DUF7014
Motif
Other DBs
NCBI-GeneID:
101305191
NCBI-ProteinID:
XP_011466793
LinkDB
All DBs
Position
LG6:complement(13118682..13125259)
Genome browser
AA seq
1101 aa
AA seq
DB search
MDMERRPFNRSNEPGLKKARLNDDQGVVNPNLNGRGGFGQRPGGANPVLSRFRVTDRESE
SNDLRGGGAYVPQPLQHHQELVSQYRTALAELTFNSKPIITNLTIIAGESQNAAKAITAT
ICANIIEVPSEQKLPSLYLLDSIVKNIGRDYIKHFAARLPEVFCKAYRQVEPPIHQSMRH
LFGTWKGVFPAQTLQMIEKELGFTTAANGSSSGVSSSRPDSQSQRPANSIHVNPKYLERQ
RLQQPVRKTKGMASDFDGTMTNSIDDIERSDRVASISAGRSWADPPVKMPNIQRSTRDAL
SERFHEKNVGGEYDESDYDSDLPRSSSLAIGRSGGNIIEQGHDKPWYGGVSSAAETISGQ
RNGFNKKHGLNYSAPKSANADPRLQTPQAIASRNRGGLSSSWKNSEEEEYMWDDMNSRLT
DHVTPDLSSNSRKERWISDDSEKMGFGGGSRKLKRVNDLDMDTDIVEQKDISALGHRMPS
PWSLQESHVVDRLTSSGTPVMNSAHSERYVSSLSGLSTSGDSSVARLGNRAQMMSSHVGA
SSFGLPTNAASGSNGAVGKQQQIQSVRAASPSGQLLMHQHAPLPASKIQNPRHYLAEQDP
AQAPSLPPDLKVSQILGKSDSGLHSQYTEDSLPIPTSNLRLGGMAKSQPQELKALSSSMA
AIQSKHHYPFQQQDITEPESSDQTEKPHKMPSTVRNSISDLSNLLAAETSGQSSTSSLLA
AVLKTGILSNKSITGSLPSSSFGDMEKMPPQSVSQPPLPIGRPPTKAALPGLKVAPAPSL
GHPSRDNSPTTSSTLQKVGHPPLPPGQPPLSQEGGSTAKDSNAKDPISNLLSSLVAKGLI
SASKSESTTPLPSHKPTEVQIQKLPTTTVSSISPGSASSIVPGSSRRDNAPLAEQVVKPS
AALAQSTKTEKKNPIGFEFKPDKIRELHPSVIDELFDDLQHKCILCGLRLKLKERLDRHL
EWHALKTPEADGSIKASRGWYANSANWVTGKAGSSSDLDSNNSNDMTGMTVASNEPTVPA
DESQCACIICGNTFEDFYCQESDDWMFKGAVYMTVPAGDGELGTAGGSVLKGPIVHATCI
DENSLEELGLAATRVKLEKDD
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atggacatggagcgcaggccgttcaacagatcgaacgaaccaggcttgaagaaggcgaga
ctgaacgacgaccaaggcgtcgtgaatccgaatctgaacggccgaggagggtttggacag
aggcctggcggagctaatccggtgctttcgaggttcagagtgactgatagagagtcggag
agcaatgacctccgcggcggcggagcctatgtccctcagccattgcagcaccaccaggag
cttgtgagccagtaccggacggcgctggcggagttgaccttcaattcgaagcctatcatc
accaatttgaccatcatcgccggggagagccaaaacgcggccaaggctatcactgcgact
atttgcgccaacattattgaggttcctagtgagcagaagttaccatcactttatcttttg
gacagtattgtaaaaaatatcggacgggattacataaaacactttgccgccaggctacct
gaggtattctgcaaggcatatagacaggttgaacctcctatacatcaaagcatgcgccat
ctttttggaacttggaaaggtgtcttccctgcccagacacttcagatgattgaaaaagaa
cttgggtttactactgcagcaaatggttcgtcctctggagtttcatcatctagaccagac
tcacagtcacaacgtccagcaaatagcattcatgtgaaccccaaatacttggaaaggcag
cgtcttcagcaaccagtgaggaagacaaaagggatggctagtgactttgatgggactatg
acaaactcgattgacgatatagagaggtcggacagagtagcaagcatcagtgctggacga
tcatgggctgatcctcctgttaaaatgcctaatattcagcgttcaactagagatgcacta
agtgagcgttttcatgagaagaatgttggtggcgaatatgatgaatctgattatgattct
gatcttcctaggagttcaagcttggccattgggcgatctggtgggaatattatcgagcaa
ggacatgataaaccttggtatggaggtgtcagcagtgctgccgaaacaatttccggccag
agaaatggttttaacaagaagcatggattaaattactcagcacctaaatctgcaaatgct
gatcctcgtctacagacaccacaagccattgcaagtagaaataggggtgggttgtccagt
agttggaagaattctgaggaagaggaatacatgtgggatgatatgaactcaagattgaca
gatcatgtaacccctgatctttctagtaactcaagaaaagagcgctggatttctgacgat
tcagagaaaatggggtttggaggtggctctcgtaaactgaaaagagttaatgatctggac
atggatactgatattgttgaacagaaagacatatctgctcttgggcaccgtatgccatca
ccttggtctttgcaagaatcgcatgttgtggatcggctgacctcttccggtactcctgtc
atgaattcagctcattcagagcgttatgtttcaagtttaagtgggttatcaacaagtgga
gattcttcggtggcgaggttgggaaatagagcacagatgatgtcttctcatgttggggcc
tcaagctttgggttgccgacaaatgctgcatcagggtctaatggagctgtagggaaacag
caacagattcagtctgtgagggctgcatcaccatctggacagttactgatgcaccagcat
gctcccttacctgcatcaaaaatacagaatccccgtcattatttggctgagcaagaccct
gctcaagctccatcccttcctcctgacttgaaagtatctcaaattttgggaaagtcggac
tcagggttacatagccagtataccgaggactctttacctattccaacttccaatctccga
ttaggtggcatggcaaagtcacagccccaagaattgaaggctttgtcttcgtcaatggct
gccatccaatcaaagcaccactatcccttccaacaacaagacattacagagcctgaatcc
tcggatcagactgagaagccccataaaatgccctcaacagtcagaaattctatatcagat
ctttctaatctccttgctgcagaaacttcaggacagtcaagcacaagtagtttgttggcc
gctgttttgaagaccggaattctctctaacaaatcaattactggtagccttcccagttcc
agttttggtgacatggaaaaaatgccaccacagtcagttagtcaaccacccttgccaatt
ggacggccacctaccaaagctgcacttccagggttgaaggttgcaccagcaccttcattg
ggtcatccttcccgtgataactcgccaaccacctcaagcactctgcagaaggttggacat
ccacctcttccacctggccaaccacctttgtcacaagagggtggttcaacggcaaaagat
tcaaatgccaaggatccaatatcaaaccttttaagctctttagttgccaaagggttgata
tctgcatcaaagtcggagtcaactacacctctgccatctcataagccgacagaagtgcaa
attcagaaactacccacgactaccgttagctctatctctccgggttcagcatcatcaata
gttcctggttcatctcgaagggataatgcacctctcgcagaacaggtggtcaaaccttct
gctgcattggctcaatctactaagacggaaaaaaagaacccgataggatttgagtttaag
ccagataaaatccgagagttacatccatctgtcatcgatgagctttttgacgaccttcaa
cataaatgtatcctatgtggactcaggctcaaacttaaagaacgtcttgataggcacttg
gaatggcatgctttgaaaactcctgaagcagatggttcaattaaggcatcaagggggtgg
tatgcaaattcagccaattgggttactggaaaggcaggaagttcttctgaccttgactcc
aacaattcaaatgacatgactggcatgacagtggccagtaatgagcctacggttccagct
gatgaaagccagtgtgcatgtattatatgtggcaatacttttgaagacttctattgtcaa
gaaagtgatgactggatgttcaaaggagctgtgtatatgactgttccagctggggatggt
gaacttggaactgcagggggaagcgttctgaagggtcccattgtgcatgcaacttgtatt
gatgaaaattcacttgaggaattgggactggctgctacacgagttaaattggaaaaggat
gattag
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integrated database retrieval system
