Fragaria vesca (woodland strawberry): 101305407
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Entry
101305407 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101305407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101305407
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101305407
Spliceosome [BR:
fve03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101305407
Complex B
101305407
Complex C
U2 SnRNP specific factors
101305407
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Ortholog
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101305407
NCBI-ProteinID:
XP_004288535
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Position
LG1:20373229..20376798
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AA seq
779 aa
AA seq
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MSKRKFGFEGFGINRQSTYNFEQSQQPPQRLYVPPSSRAHGHDNYEDTDLDNIDYDDVDA
AANKGGDGGEEEEVDPLDAFMEGIHEEVRSAPPPKPKEKADKYQDDDEEDHLESFLRAKK
DATLTLASDALHAGYDSDEEVYAAAKAVDAGLVEYDSDDNPVVVDRKRIEPISALDHSCI
DYEPFTKDFYEEKESISAMSEQDVAEYRKSLAIRVSGFDVPRPVKTFDDCGFSPQLMNAI
KKQEYEKPTPIQCQALPIVLSGRDIIAIAKTGSGKTAAFVLPMICHIMDQPELQKDEGPI
GVICAPTRELAQQIHLEAKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLI
DMIKMKALTMQRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVETL
AREILSDPVRVTVGEVGMANEDITQVVHVLPSDAEKLSWLLERLPGMIDDGDVLVFASKK
AGVDEIETQLSQKGFKAAAIHGDKDQATRVDIMNKFKSGTYHVLIATDVAARGLDIKSIK
SVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELVNSLVGAGQNVPVE
LMDLAMKDGRFRSKRDSRKGGGKKGKGRGGGRGGGSGGNSGRGVRGVDFGLGIGYNPESN
SSPSPAVTSRSAAVTSLRTGMMSQFKNKFVSATSNSPSQGSGNSLSAHANKRPALRGFVA
AGSIGGGIYAPQTTNTVSPPPASAVNISSQNSEENSSQKLTESSRDKPRERRRRSGWDC
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgaaagttcggattcgaagggttcggcataaaccggcaatcgacctacaac
ttcgagcagtcccagcaaccccctcagcgcctctacgtccctccctcctcccgcgcccac
ggccacgacaactacgaagacaccgaccttgacaacatcgattacgacgacgtcgacgcc
gccgcgaataaaggcggagacggcggtgaggaagaagaagtcgatccgctcgatgcgttc
atggaggggattcacgaggaggtgaggtcagctccgccgccgaagccgaaagagaaggcg
gacaagtaccaggacgacgacgaggaggatcatctggagagcttcttgagggcgaagaag
gacgccacgctgacgctggcctccgacgcgctccacgccggatatgattccgacgaggag
gtctacgccgctgccaaggctgtcgatgccggattggtggagtatgattcggatgacaat
cctgttgttgtcgataggaagaggatcgagccgatttcggctctggatcatagctgcatt
gactacgagcctttcactaaggatttctatgaggagaaagagtccatttcagcgatgagt
gagcaggatgttgccgagtaccgaaagagcttggccatccgagtgtctggctttgatgta
ccaaggccagtgaagacgtttgacgactgtgggttttctccgcaactcatgaatgcaatc
aaaaaacaagagtatgaaaagcctacaccaatacagtgccaagctttacccatagttctt
tcagggagggatatcattgctatagcgaaaactggttctggaaagactgctgcttttgtg
cttcccatgatttgccatattatggatcagccggaacttcagaaagatgaaggtcctata
ggagtaatatgtgcacctactagagaactggcgcagcaaatacacctagaggccaagaaa
tttgctaaatcacatggcatccgtgtctctgctgtttatggtgggatgtcgaaacttgat
cagttcaaagaactaaaggcaggatgtgagatagttgtagctactcctgggagattgata
gacatgattaaaatgaaggcactgacgatgcaaagggcaacttacctagtgcttgatgag
gctgatcggatgtttgaccttggttttgagcctcaaattaggtctatagttggtcagatt
aggccagaccgtcaaacgttactcttttctgctacaatgccccgaaaggttgaaacgttg
gctagggaaattctctctgaccctgtaagagttaccgtgggtgaggtgggaatggccaat
gaggacattactcaagttgttcatgtacttccttctgatgctgagaagttgtcatggctt
cttgaaagattaccgggtatgattgatgatggggatgtattagtatttgcttctaaaaag
gctggagtggatgagatcgaaacacagctttctcagaaaggttttaaagctgcagccatt
catggtgataaggaccaggctactagggtggatattatgaacaaatttaaatctggcacc
taccatgttctgattgcaactgatgttgctgctcgtggtcttgatatcaagtcaattaag
tcagtggtaaactttgatattgcaaaagacatggacatgcatgttcatcgtattggtaga
acaggtcgtgcaggtgataaagatgggactgcatacactcttatcacacataaagaggca
cggtttgctggagaattggttaatagcttagttggggctggtcagaatgttccagtggag
ctcatggaccttgcgatgaaggatggaagattcaggtctaaacgtgattcaagaaaagga
ggtggaaagaagggcaaagggagaggcggtggtagaggcggtggcagcggtggcaacagt
ggtcgaggtgtgcgtggggtggattttggtttgggtattggatataatccggaatccaac
agttctccatcacctgctgttaccagtcgatctgccgcagttacttctttaagaacagga
atgatgtctcagtttaagaataagtttgtttctgctacatcaaactctccaagtcagggt
tctggtaacagtttgagtgcgcatgccaacaagaggcctgcattacgaggatttgtagct
gctggttccattgggggaggcatatatgcgcctcagacaaccaatacagtttctccgcct
cctgcatcagcggtaaacatttcttctcagaactcggaagaaaattcgagccagaagttg
acggaaagttctagagacaaacctagagaaaggcggaggcgctctggttgggactgttga
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