Fragaria vesca (woodland strawberry): 101306019
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Entry
101306019 CDS
T02666
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
101306019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fve04131
]
101306019
Membrane trafficking [BR:
fve04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
101306019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_WDHD1_1st
WD40_CDC20-Fz
zf_RING_Vps8
WD40
Beta-prop_HPS5
WD40_Prp19
WDR55
zf-RING_2
Beta-prop_EML_2
zf_RING_Vps8_fungal
zf-RING_11
Beta-prop_WDR11_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
OATP
PEP5_VPS11_N
WDR90_beta-prop_4th
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
101306019
NCBI-ProteinID:
XP_004294056
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All DBs
Position
LG3:complement(9273593..9284005)
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AA seq
959 aa
AA seq
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MAPIPPDNGVEGDDERDEEEEEEEEVEEEEEEEEEEEEEEEEPRLKYQRMGGSIPTLLAN
DVASCIAVAERMIALGTHGGTIHILDFLGNQVKEFSAHTAAVNDLSFDIEGEYIGSCSDD
GSVVINSLFTDEKMKFEYRRPMKAIALDPEYARKSSRRFVAGGLAGHLYLNTKRWLGFKD
QVLHSGEGPIHVVKWRSSLIAWANDAGVKVYDTANDQRITFIERPRGSPRPELLLPHLVW
QDDTLLVIAWGTSIKITSIKTNQARAANGSYRPVPVSSMNQVDIVASFSTSYFISGIAPF
GDSLVVLAYIPGEEDGEKEFSSSVPSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYK
AKDYSLAHAPFSGSSYAGGQWAEGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGAHEK
ALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHL
RQLPVLVPYIPTENPRLRDTAYEVALVAIATNPSFHKELLSTVRSWPPVIYSSLPVISAI
EPQLDTSSMTDALKEALAELYVIDGQYEKAFSLYADLMNPNVFAFIEKHNLYDSIREKVV
PLMMLDCKQAVPLLIQNKDLITPSEVVKQLLNASDKCDSRYYLHLYLHSLFEVNPHAGKD
FHDMQVELYADYDSKMLLPFLRSSQHYTLEKAHEICTRRDLVKEQVFILGRMGNAKQALA
IIINKLGDIEEAVEFVNMQHDDELWEELIQQCLHKPEMVGVLLEHTVGNLDPLYIVNMVP
NGLEIPRLRDRLVKIVTNYRTETSLRHGCNDILKADIVNLLVKYYNEAKHGIYLSNEEDE
ARAKRNDGRTSQVIEKSPGVRSMEVKSKPKGGARCCICFDPFSIQSVNVIVFFCCHAYHM
NCLMDSAYSSGINGSGITSQERVTDYGYDDSDEDDDGDDGPQTGGSRMRCILCTTASGA
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggctccgattccgccagacaacggcgtggaaggagacgatgagcgcgacgaggaggaa
gaagaggaggaagaagtagaagaagaagaggaggaagaggaagaggaagaggaggaggag
gaggagccgaggctcaagtaccagcgaatgggaggcagcattccgacgctgctagcgaac
gacgtcgcttcgtgtatcgccgtcgccgagcggatgatcgcgctcgggacgcacggcggg
accattcatattcttgattttctcggcaatcaggttaaggaattttctgctcatactgct
gctgtgaacgatcttagctttgacatagaaggtgaatatataggaagctgttcagatgat
gggtctgttgtaataaacagcctttttacagatgagaaaatgaagtttgagtatcgtcgc
cctatgaaggctattgctctagatccagaatatgcaagaaaatcatccagaagatttgta
gctggtgggctcgcaggccatttatacttgaatacaaagagatggctagggtttaaagat
caggttttgcattctggtgagggtccaatacatgtggtgaagtggagatcaagtctcatt
gcttgggctaatgatgcaggtgtgaaagtatatgatactgcaaatgatcagcggataaca
ttcatagaaagaccacgtggaagcccacgtcctgagcttttgctgcctcacttagtttgg
caggatgacacactgttggtcattgcttggggaacatcaatcaaaatcacatcaataaaa
acaaatcaggctagagcagccaatggttcatataggcctgtcccagtttccagtatgaac
caggtggatattgtggcatcctttagtaccagctatttcatttcgggaattgcccctttc
ggtgattctttggttgttctagcttatatccctggtgaagaagatggggagaaggaattt
agtagttctgttccatcacgtcagggaaatgcacagagaccagaagtacgcattgttaca
tggaataatgatgaactttcaacagatgcgctacctgtacatggctttgagcattacaag
gcaaaggactattcactggctcatgctcctttctcaggtagcagctatgctggtggtcag
tgggctgaaggtgatgaaccgctgtactatatcgtatcaccaaaggatgtggtcatagca
aaacccagagatacggaagatcatattgcttggcttcttcaacatggtgcacacgaaaaa
gctttggctgcagttgaagctggccagggacgaagtgaacttctcgatgaggttggttct
agataccttgatcatttgattgtggaaagaaaatatgcggaagcggcatcgttgtgtccc
aaattgttgcgaggatcagcttctgcctgggaaagatgggttttccactttgctcatctg
cgtcaacttccagtacttgtgccatatataccaacagagaacccaagattacgtgatact
gcatatgaggttgctcttgtagctattgctacaaacccctcttttcataaggagctcttg
tcaactgtcagatcttggccacctgtgatttattcttcattacctgtaatctctgctata
gaacctcagctcgacacatcctccatgacagatgctcttaaggaggcactagcagagttg
tatgtcattgatgggcaatatgagaaagccttttcactatatgctgatcttatgaaccca
aatgtatttgccttcatcgaaaaacacaatctgtatgattcgattcgggaaaaggtcgtt
ccactgatgatgctggattgcaagcaagctgttcctttattgattcaaaataaggactta
attaccccatctgaagttgtcaaacaacttttgaatgcgagtgataagtgtgattccaga
tattacttgcatctatatttgcattcactgtttgaagtaaaccctcatgccggaaaagat
ttccatgacatgcaggtagagctttatgcagactatgattcaaagatgctgcttcctttt
ctccgtagtagtcaacattatacacttgagaaggcacatgaaatttgcaccagaagggat
cttgtaaaggagcaagttttcattcttggaagaatgggaaatgcaaaacaagctcttgct
ataatcattaataaactaggtgacattgaagaggctgtagagtttgtgaatatgcaacat
gatgatgaactgtgggaggaattgattcagcagtgtcttcataaacctgagatggtcggc
gtgctattggagcacactgttggaaatcttgatcctctgtatattgtgaatatggttcct
aatggactggagattcctcggctcagggataggctagtcaaaattgtcaccaattacagg
actgaaacatctctaagacatgggtgtaatgacatccttaaggctgatattgtgaacctc
ttggtcaaatactacaatgaggcaaaacatggaatttacttgagcaatgaagaagatgag
gcacgagcaaaaagaaatgatggtaggacttctcaagtaattgagaaatcacctggtgtg
agaagtatggaggttaaatcaaaacctaagggcggtgcaaggtgttgcatctgtttcgat
ccgttttctatacaaagtgttaatgtcattgttttcttttgctgtcatgcttatcacatg
aattgtcttatggattccgcctattctagtggaattaatgggagtgggatcacttcccag
gagagagttacagattacgggtatgatgatagtgatgaggatgatgatggtgatgatggt
ccccaaacgggtggctctcgcatgcgttgtatcttatgtactactgctagtggagcttag
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integrated database retrieval system
