Fragaria vesca (woodland strawberry): 101306596
Help
Entry
101306596 CDS
T02666
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03015
mRNA surveillance pathway
fve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101306596
09123 Folding, sorting and degradation
03018 RNA degradation
101306596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101306596
03041 Spliceosome [BR:
fve03041
]
101306596
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101306596
mRNA cycle factors
Stress granule specific factors
101306596
Spliceosome [BR:
fve03041
]
Complex C
Other components
Complex C specific factors
101306596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_Nup35
RRM_RdRP1_2
RRM_7
RRM_3
BRAP2
SET_assoc
Motif
Other DBs
NCBI-GeneID:
101306596
NCBI-ProteinID:
XP_011459765
LinkDB
All DBs
Position
LG2:13563127..13567471
Genome browser
AA seq
652 aa
AA seq
DB search
RLIRSFFFSGNGGGCGVVSGGSTRCSGGPTGSGSGGXFGNVSLYVGDLDPSVNEEQLYYL
FNQVAQVASLRVCRDQTRMHSLGYAYVNYATPQTAANAKELLNFAPINGKPIRIMYSQRD
PSIRKSGYANLFINNLEKSIDNKALLDTFSAFGTVLSCKVAADANGQSKGYGFVQYDNEE
SANNAINQLNGMLINEKKVSVGHHVRKSSNEFKNIYVKNLPETITEEDLQNYFGESGPIT
SAAVMRDAHGKSRCFGFVNFDKAGDAITAIEKFNGKPYKDKVLFVGKAQKKVDREKELRA
KFEQERISRFEKLQGANLYLKNLDDTVNDDKLKELFSEFGTITSCKVMLDHQGMSKGSGF
VAFSSPEEANKALNEMNGKMIGRKPLYVAVAQRKEERKARLQARFAQIRAPGAMIHLPSP
IPGYYPGAPRLSPQQLYYGQGTPGLLPHQPAGYGFQQQILPGMRPGVAPNFIMPYHLQRQ
GQPGQRIGVRRGGNFQQVQQQQQLMHRNSNQGSRYIGHARNGVDSAVSPQGLVSPVMPLP
FDGSGMPAVTSSDIQRTGPMPMSTLASALASATPENQRLMLGEQLYPLVERIEPELTAKV
TGMLLEMDQTEVLHLIESPDALKDKVAEAMDVLRNATSKTDVADQLGALDLN
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
cgtcttattcgatcattttttttttctggcaatggcggcggctgtggtgtcgtctcaggt
ggctcaacccgctgctccggtggcccaacaggctccggctccggcgggnngttcgggaat
gtgtcgctatacgtgggagatctggacccgagtgtgaacgaagagcagctttactatctg
ttcaaccaagtggctcaggttgcttcccttcgggtttgtagggatcagaccagaatgcac
tcgcttggctatgcttatgtcaattacgccactccacagacagctgctaatgccaaggag
ctcttaaattttgctcctataaatgggaaacccattaggatcatgtactcgcagcgtgat
cccagcattcggaagagtggatatgcaaatttatttatcaacaacctggagaaatctatt
gataataaggcattgttggacactttttctgcttttgggactgtactctcttgcaaggtc
gcagctgatgccaatggtcaatcaaaaggatatggattcgtacagtatgataatgaggaa
tctgcaaacaatgcaatcaaccagctgaatggcatgctcataaacgagaaaaaggtttct
gttggacatcatgttcggaagtcatcaaatgaattcaaaaatatatatgtcaaaaatttg
ccggagacaattacagaggaagacctccagaattattttggtgaatctggacctatcact
agtgcagcggttatgagggatgcacatggaaagtctagatgctttggttttgtcaacttt
gataaagctggtgatgctataactgcaattgagaaattcaatgggaaaccttataaagat
aaggttttgtttgtcggtaaggctcaaaagaaagtagacagggagaaagagttaagagcc
aagtttgaacaggaaagaatcagcagatttgagaagctccaaggggcaaacctatatctg
aaaaatcttgatgacaccgtaaatgatgacaaactgaaggagctattttcagaattcgga
acaataacttcatgcaaggtcatgcttgatcatcaagggatgagcaagggatctggattt
gttgccttttcaagtccggaggaagctaacaaagctttgaatgaaatgaatgggaagatg
attggtcggaagcctctatacgttgctgtggctcagcggaaagaagaaaggaaggctcga
ctgcaggcacgttttgcacaaatccgagcaccaggtgcgatgatacatttgccatcgcca
attcctggatattatcctggggcacctaggctttcacctcagcagctgtattatggtcaa
ggtactccgggccttctaccccatcagcctgcaggttatggcttccagcagcaaatcttg
cccgggatgcgtccaggtgttgctcccaacttcattatgccgtaccaccttcaacggcaa
ggtcaacctgggcagagaataggtgtacggcgagggggaaacttccaacaagtgcagcag
cagcagcagttaatgcatcgtaactccaatcaaggctcgagatacataggtcatgctcgg
aacggggtggactctgctgtgtctccccaaggtcttgtgagtccagtgatgcctttgccc
tttgatggttcggggatgcctgctgtgacatcaagtgatatccagcgtactgggccaatg
cctatgtcaacacttgcttctgctttagcttctgctactcccgagaatcagcgtttgatg
ctgggagagcagctatatcctcttgttgagcgtattgagccagaactcacagctaaggtg
actgggatgttgctggaaatggaccagacagaagttctccatcttattgagtctccagat
gcactcaaggataaggtagctgaagcaatggatgtgcttcgtaatgctacatcaaagact
gatgtcgcggatcagcttggtgcattggatctgaattag
DBGET
integrated database retrieval system
