Fragaria vesca (woodland strawberry): 101306725
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Entry
101306725 CDS
T02666
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101306725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fve03009
]
101306725
Ribosome biogenesis [BR:
fve03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
101306725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_NUP159_NUP214
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_TEP1_2nd
Beta-prop_NOL10_N
NBCH_WD40
Beta-prop_SPT8
WD40_like
DUF7165
Motif
Other DBs
NCBI-GeneID:
101306725
NCBI-ProteinID:
XP_004300315
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Position
LG5:22709112..22711999
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AA seq
560 aa
AA seq
DB search
MSLISQNIPSHKTKRLEVYEPSFLQGNEDSTDGKESHLEIMRMTQRKKARKGEDETVAVE
QEKEMKKLENFLFGSIYSPVEFGKEDEEEAVDEVGKGSALFFVDRSATIVQPGDEYDAEL
SEEDMKQRKPVWMDEEEEKANINISKVNRLRKLRKEEDESFISGSEYVLRLRAQHAKLNP
GTEWSQLDSQMRNNRYSDDESSDEENGLVVPRGYKEIGAADDLLRTNEDLVVKSSGKLLP
GLLEYSTLVDANAEEPCNGPINSVQFHRNAQLLLAAGLDRRLRFFQIDGKRNTKIESIFI
EDCPIRKAAFVPDGSQVIIAGRRKFFYSFDLVKAKVDKIGPLVGREEKSLEVFEVSPDSS
TIAFVGNEGYILLVSTKTKELIGTLKMNGTVRSLAFSNDGNQLLSSGGDGQVYHWDLRTG
ACFHKMVDEGCINGTSLCTSPNGSLFAAGSDSGIVNIYNRDEVLGGKRKPIKTIENLTTK
VDFMKFNSDAQILAICSSMKKNSLKLVHVPSYTVFSNWPPQRQVLHYPRCLDFSPGGGFM
AVGNAAGKVLLYKLHHYHHA
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgagtttaatatcacaaaatattcccagccacaagactaaaagattggaggtttatgag
ccttcatttctgcaagggaatgaagatagcacggatggaaaagaatctcatttagagatc
atgaggatgacacagagaaagaaagcacgtaaaggagaggatgagacggtggcagttgag
caagaaaaggaaatgaagaagctggagaactttttgtttggatcaatttattccccagtt
gagtttgggaaggaggatgaggaagaagctgtagacgaggtcggtaaaggctctgcttta
ttctttgttgaccgttctgcaactattgtgcaacctggtgatgaatatgatgcagaatta
tcagaagaggatatgaagcaaaggaaacctgtgtggatggatgaggaagaggaaaaggcc
aacattaatatttctaaggttaatagattgaggaagctgagaaaggaagaggatgaaagt
ttcatttctggttctgagtatgttttacgattaagagctcaacatgctaagctgaatcca
ggtacagaatggtctcaacttgattcacaaatgaggaacaatagatactctgatgatgaa
tcctctgatgaagagaatggcttagtagtgccacgtggttacaaggagattggagctgcc
gatgatctccttcgtacaaatgaggatcttgttgtgaagagcagcggaaagttactgcct
ggacttcttgaatattcaacacttgtggatgcaaatgcagaggaaccttgtaatggccca
ataaattcggtgcaatttcatagaaatgctcagttgcttcttgctgctggattggatcga
aggcttagattttttcagattgatggcaaacgaaatactaagatagaaagcattttcatt
gaagactgtcccatacggaaggcagcttttgtgcctgatgggtctcaggttattatagct
ggaaggaggaagttcttttatagttttgatttagtgaaggcaaaagttgataaaataggt
cccctagttggtagagaagagaaaagcttggaagtttttgaggtttcccctgattctagt
acgatcgcattcgtgggaaatgaaggttatatcttattggtttccactaaaacaaaggaa
ttgattgggacactcaagatgaatggaacagttcgctctttagctttttctaatgatggg
aatcaactattgagctctggtggagatggacaggtttaccactgggatctgagaacaggg
gcctgcttccacaaaatggttgatgaagggtgtatcaatggtacatccctttgtacatct
ccaaatggatccttgtttgctgctggttcagacagtgggattgttaatatttataacaga
gatgaggttttaggaggcaaaagaaaaccgatcaagactatagagaatcttacaaccaaa
gtagattttatgaagttcaatagtgatgctcaaatattagctatttgttcaagcatgaag
aagaacagcttgaagttggttcatgttccatcatatactgtattttccaactggccaccc
caaaggcaggtcttacactatccccgctgtttggattttagtcctggtggaggtttcatg
gctgtgggcaatgctgcgggaaaagtattattatacaagttgcatcactaccatcacgca
tag
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