Fragaria vesca (woodland strawberry): 101306750
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Entry
101306750 CDS
T02666
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101306750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101306750
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101306750
Spliceosome [BR:
fve03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101306750
Complex C
U4/U6.U5 tri-SnRNP related factors
101306750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
PWI
nSTAND3
AAA_30
T2SSE
AAA_16
TsaE
Sigma54_activ_2
AAA_7
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
101306750
NCBI-ProteinID:
XP_011459555
LinkDB
All DBs
Position
LG1:5277768..5281482
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AA seq
1037 aa
AA seq
DB search
MGSQSNLKTWVSDKLIALLGYSKPVVVQYVIGLTKKANSPVGLVDKLVEFGFASSAETGE
FAEEIFARVCGDTSGLTQCGKEERGGTMSVRVVQRSYVLLDSDDDGDVERSSVQVVSHSV
SVKVGSSEKRFRKRGLGQKDGDDGDEVIAQEEERRVKRRNSIDKDDHEDGSESEEERLRD
QREREQLEQNIRKREAAATRQLTKKKLRRSGGQEAVRKSSDDVEGLRRASRQEYLKEREK
KKMDEMRDDVEDEGYLFEGVKLIEAEKRELSYKKQILELTRKPLDAYDDVERGVAQQKRF
SVALQRYRDCNAGDKMNSFEQQKSWEDQQLGKATLKFGSKNKKGVSDEYDFVYEDQIDFV
RGFLTEEDKFDNDKQLQSTKLLELSENILKEKLQEERKTLPIFSFRDELLQAVKDHQVLV
IVGETGSGKTTQIPQYLHEAGYTKHGKIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYS
IRFEDCTSEKTVLKYMTDGMLLREFLAEPDLASYSVLMVDEAHERTLSTDILFALVKDIA
RFRPDFKLLISSATLDAVKFSDYFDHCPLFNIPGRRFPVDIYHTKAPEADYLDAAIAAAI
QIHVREPPGDILVFLTGQEDIETASEMLKYRTSGLGRKIAEMIICPIYGNLPSEQQAKIF
DPTPEGARKVVLATNIAETSLTIDGIKYVIDCGYCKMKSYNPRTGMESLQVTPISKASAR
QRAGRSGRTGPGKCFRLYTFDSYIHELDDTTTPEILRTNLAHVVLRLKSLGIHDLIHFDF
MDPPPSEALLKALELLFALSALNKMGELTKVGRRMAEFPLDPMLSKMVVASDRYNCSNEI
ISIASMLSVGNSIFYCPKDKQVYADNARRNFHTGDAGDHIALLNVYNTWAETNYSSQWCY
ENYINARSMRRARDIRDQLRRLLERVEIELTSNRDDIESIKKAITSGFFPHCARLQKNGS
YKIVKHQQAASIHPSSGLSKEFPTWVLYHELVLTSKEYMRQVTELKPEWLLEIASHYYQL
KDVEFASTSKKTSGGSN
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atggggagccaaagcaatttgaaaacatgggtgtctgataagttaatagcattgctcgga
tactctaagccggtagttgttcagtatgttattgggttaactaagaaagcaaactccccg
gttggtttggtggacaagcttgttgaatttggatttgcctcatcggccgaaacgggggaa
tttgctgaagaaatatttgcaagagtgtgtggtgacacatctggtttgacgcagtgtggg
aaggaagagaggggaggaacaatgtcggtgagggtggtgcagcggagttatgttctgttg
gattcggatgatgatggtgatgtggagagaagttctgtccaggttgtttctcattctgtg
tccgtaaaagtgggttccagtgagaaacggttcaggaagagggggttgggtcagaaagat
ggagatgatggtgatgaggtgattgcacaggaggaagagagacgtgttaaaaggcggaac
tcaattgataaagatgatcatgaggatggttcagagtcggaagaagaaagattgcgtgat
caaagagagagggagcaattggagcaaaatataaggaagagggaagcagcagccacccga
cagctaacaaagaaaaaattgagacgaagtgggggacaggaggctgttcgaaaaagtagt
gatgatgttgaaggtttaagaagagcttcaagacaagaatatctgaaggaaagagagaaa
aagaaaatggatgaaatgagggatgatgtggaagatgaaggttacttatttgaaggtgtg
aagctcattgaagcagaaaaacgggaattaagttacaagaagcagatattggagcttacg
agaaaaccattagatgcctatgatgatgtggagcgtggtgttgctcaacagaagagattt
tctgtagctttgcagcgctacagggactgtaatgctggggataaaatgaactcatttgaa
caacagaaatcttgggaagatcagcaacttggaaaagcaacactgaaatttggttcaaaa
aacaaaaaaggggtatctgatgagtatgattttgtatatgaagaccagattgattttgtc
agggggttcttgacggaggaagataaatttgacaatgataagcaactgcagtccaccaaa
ttacttgagttgagtgaaaatatcttgaaggagaagctccaggaggagaggaaaacttta
cccatcttctcctttcgtgatgagttgctccaagctgttaaagatcatcaggttcttgtt
attgtcggcgaaactggatctggaaaaactacacagattcctcagtatctacatgaggca
ggatacacaaagcatggaaagattgggtgcacgcagccacgccgagttgctgctatgagt
gttgctgccagggtatctcaagaaatgggtgtcaagcttggacatgaggtagggtattct
attcgttttgaggattgcacgtctgaaaagactgttttgaagtatatgactgatggaatg
ttgttgcgtgaatttcttgctgaaccagatttggcaagctatagtgtgctgatggtggac
gaggcccatgagagaacactgtctactgatattttatttgcattagtaaaggatattgct
cgatttcgacctgattttaagctgcttatctcaagtgcaacacttgatgctgtgaagttc
agtgattattttgatcattgcccacttttcaatattccagggaggcggtttcctgttgat
atataccacacaaaagcgccagaagctgattacttggatgctgcaatcgctgctgcaatt
caaatccatgtcagggaaccacctggagacatattggtcttcctcactggtcaagaagat
atagaaacagcaagcgaaatgttaaagtacaggacaagtggtctggggagaaagatagca
gagatgattatctgtcccatatatggaaacttgccttctgagcagcaagcaaaaattttt
gatcccacacctgaaggggcaagaaaggttgtccttgccacaaacatagctgaaacttcg
ctgactattgatgggatcaaatatgttatcgactgtggttattgcaagatgaagtcctac
aatccaaggactgggatggagtcattgcaagtcactcccatctcaaaggcatcggcaagg
cagagggcaggtcgatctggtcgaacaggccctggtaagtgtttccggttatatactttt
gacagttatattcatgaactggatgataccactacacctgaaatactaaggactaacctg
gcacatgttgttcttaggcttaaaagtcttggtattcatgacttaatacattttgatttt
atggatcctccaccgtcggaagcattactaaaagcccttgaactgttatttgctctgtct
gcattgaataaaatgggagagttgactaaagttggtaggcggatggcagagtttccgctt
gatccaatgttatctaagatggtagtcgcttctgacaggtacaattgctcaaacgagatc
atttctattgcttccatgctttctgttggtaattcaatcttttattgtccaaaggacaaa
caagtctatgctgacaatgcaagaaggaattttcacactggggacgcaggagatcacatt
gccttgcttaatgtttacaatacctgggcagaaacaaactactcaagtcaatggtgttat
gaaaactatataaatgctaggagcatgagaagagcaagagatatcagggatcaacttagg
agactgttggagagggttgagattgagctaacctcaaatcgtgacgatattgagtctata
aagaaggccatcacatcaggtttcttccctcattgtgcaaggctgcaaaagaatggatct
tataaaatagtcaaacatcaacaggctgcctccatacaccccagctcaggcttgtcaaag
gagtttccgacgtgggttctatatcatgaactggtccttacatccaaagaatacatgaga
caggtaacagagttgaagcctgagtggttgctggaaatagcttcacattattaccagcta
aaggatgtcgaatttgcttcaacctcaaagaaaacgtctggtggcagcaattga
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