Fragaria vesca (woodland strawberry): 101306987
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Entry
101306987 CDS
T02666
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101306987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fve03019
]
101306987
04121 Ubiquitin system [BR:
fve04121
]
101306987
03036 Chromosome and associated proteins [BR:
fve03036
]
101306987
03400 DNA repair and recombination proteins [BR:
fve03400
]
101306987
Messenger RNA biogenesis [BR:
fve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
101306987
Ubiquitin system [BR:
fve04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
101306987
Chromosome and associated proteins [BR:
fve03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
101306987
DNA repair and recombination proteins [BR:
fve03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
101306987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_UBOX
zf-RING_2
zf-RING_6
zf-RING_5
PHD_NSD
zf-C3HC4_4
Prok-RING_4
RTT107_BRCT_5
PTCB-BRCT
zf-RING_10
PHDvar_NSD
Triabin
Tox-HDC
Trm112p
Motif
Other DBs
NCBI-GeneID:
101306987
NCBI-ProteinID:
XP_011458026
LinkDB
All DBs
Position
LG2:6583146..6588595
Genome browser
AA seq
698 aa
AA seq
DB search
MASDSGTRRDGVVSPANKNPLTFHLQKLGLELTCPLCMGFFNRPTLLPCNHIFCNGCVPN
RNNFGAECPLCNIQVLGEDLRHAPFMESIVAIYKGMKATYCTSSSPPISSDVRTDLARPV
SQDVSFTGKTTTKEPFDNFQEGTIFSSRGNNRVWVPCSRKDSVTVGIGKNEKVDTCSMPI
DGNSEEFDLGTGHQFNGEVDHKSPLPSSQIRSVTMDECMTAERDMNPVVHSLLDSPPSFG
DPRGSDNDNSFYQRSEQISDSSLIRGSIRKIDDRTGQMRLDSSASDTDGHLRELKRQKKL
DYGPVSGSNSELKLGTTSNESSTINTICAFCHSSTISEVTGPMLHYSKGKLVEGDAATVS
DVIHVHRICINWAPQVYYKDDTIKNLKAEVTRGAKLKCTKCGIKGAALGCYVKSCRRSYH
VTCAIEISKCRWDYENFLLLCPAHTTDRFPNEKLNRNKNKKCQLSGGTVASNGVNNWVLC
PSGLSSEEKILLINFAEMNCATLSKSWTPDVTHVIAALDGDGAYVRTFKIFMAILAGKWI
VTIDWVKACMETKHHVDEEPYEVNLDNYGCRSGAKAGRLRALSNDLKLFNGLNFYFAGDF
ILERMEDYKELVLAAGGTVFNSKEELLEASCHETGAARTLVVYNLDPPPGCKLGEEVSIL
WQRSNEAQDIAAKIGGEYVFHTWLLESIARYELQPIVC
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagattccggtacccgccgcgacggcgtcgtttcgcctgcgaacaagaacccc
ctcacctttcacctccagaagctcggcctcgagctcacttgccctctctgcatggggttt
ttcaaccggccgacattgctgccgtgcaatcacatcttctgcaacggctgtgtgcctaat
cggaacaatttcggagcagagtgtcctctgtgtaatattcaagttcttggcgaagatctg
aggcatgcgccttttatggaaagcatagtagcaatctacaaaggcatgaaggccacgtac
tgtaccagctcctccccgcctatatcttcagatgttagaacagatttggctcgcccagtt
tcacaggatgtcagttttactgggaaaacaacgactaaagaaccgtttgacaatttccaa
gagggtaccattttttcatcaaggggtaataaccgagtttgggttccatgtagtcggaaa
gattctgtgacagttggaattggcaagaatgagaaagtagatacctgtagcatgccgata
gatggtaacagtgaagaatttgacttgggtacaggacatcaatttaatggtgaggtagat
cacaagtcaccattaccaagttctcaaataagatctgtaacaatggatgagtgtatgact
gcagaaagagacatgaatcctgtagtgcattcgttgctggatagtcctccttcatttggt
gatcccagaggttcagataatgataatagcttttaccagcgctctgagcaaatttcagac
agttctttgatcagggggtcaattaggaaaattgatgatagaacagggcagatgaggctg
gatagttcggcatctgatactgatggtcatttgagggaactcaaaagacaaaagaaactg
gactatggaccagtctcagggtctaattctgagctgaaacttggaacaacttctaacgag
tcttccacaattaacaccatttgtgccttttgccattcttccacaatctcagaggtcact
gggccaatgttgcactattccaaggggaaattggtggagggagatgcggcaactgtttca
gatgtcatacatgttcacaggatatgcattaattgggcacctcaagtgtactataaagat
gataccataaaaaatttgaaggctgaagtgacaaggggtgcaaaactaaaatgcactaaa
tgtgggataaagggagcagcattgggatgctatgtaaaatcctgccgaagaagctaccat
gttacctgtgcaattgaaatttctaagtgtcgttgggattatgaaaactttctgctgctg
tgtccagcacatacgacagatagatttcccaatgagaagttgaatcgtaacaagaacaag
aaatgtcagctctctggtggtacagtagcttcaaatggagtgaacaactgggttttatgc
ccttctggtttgtcttctgaagagaagattcttctgatcaactttgctgagatgaactgt
gcaactttgtcaaagagctggacacctgatgttacccatgtgattgctgcccttgatggg
gatggtgcatatgtccggacgtttaaaattttcatggcgattttggcaggaaaatggatt
gtgacaatcgactgggtaaaagcatgcatggaaaccaagcatcatgtggatgaagaacct
tatgaagttaatcttgataactatgggtgtcgcagtggcgcgaaagctggcaggcttagg
gcactaagcaatgatctgaagctcttcaatggtttgaatttctattttgctggtgatttt
atactggagaggatggaagactacaaagaattggtcctagctgcaggaggtactgttttc
aacagtaaggaagaactgctggaagcaagttgtcatgaaacgggtgctgctaggacactg
gttgtgtacaaccttgatcccccaccaggatgcaagttgggggaagaagtttcaatactt
tggcaaaggtctaatgaggcacaagatatagctgcaaaaatcggaggcgagtacgtcttt
cacacatggttgttggagtcaattgcgagatatgagttgcagccaattgtctgttga
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