Fragaria vesca (woodland strawberry): 101307178
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Entry
101307178 CDS
T02666
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve04120
Ubiquitin mediated proteolysis
fve04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101307178
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
101307178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
fve04121
]
101307178
Enzymes [BR:
fve01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101307178
Ubiquitin system [BR:
fve04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101307178
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
101307178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EIPR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_HPS5
zf-C3HC4_2
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
zf-C3HC4
WD40_RFWD3
zf-C3HC4_3
WD40_like
Beta-prop_DCAF12
zf-RING_2
zf-RING_UBOX
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
zf-RING_5
zf-C3HC4_4
MNR
Beta-prop_SCAP
Beta-prop_IFT140_1st
zf-RING_10
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
101307178
NCBI-ProteinID:
XP_004293335
LinkDB
All DBs
Position
LG3:complement(899957..903659)
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AA seq
625 aa
AA seq
DB search
MGGGAMVPTGVKMELMSADETGAFEKEAPPDKDMMCPICIQVIRDAFLTACGHSFCHSCI
VTHLGIKSDCPCCGQYLTPNLIFPNFLLDKLLRKSSAYMIERTGSPLEHLRRRLHEGCDM
SIREVEGLLSLLEEKKRKMELQESESGMEIMVGFLHSLGRQKLEELNEIQTDLDYIKEDL
IAVERRRFELFRQQHERSLQSDDIVYNAQYVQAQMSSINLHSNRAVVNDDETPTRSMQPI
NPPGELSTARKRRVRSQFNDLEECYLQKRRNGNKQGDLDAMDIEDYNPGLEDFYAMLKGF
TKYSRLRVISELRQGDIFHSANIVSSIEFDRDEELFATAGVSRCIKVFEFSSVINEPEDI
HCAVEEISTRSKLSCLSWNKYAKNQIASSDYEGIVTVWDVNTRQSVMEYEEHEKRAWSVD
FSSTDPSMLVSGSDDCKVKIWCTNQEESALNINMKANICSVKYNPGSSFFVAVGSADHHI
HYYDLRNISQPLHVFSGHRKAVSYVKFLSNTELASASTDSTLRLWDVKKNLPLCTYRGHM
NEKNFVGLAVSNDYIACGSETNEVFVYHKGIPKPMAWHKFVSSDLNYEDDGAGSYFISAV
CWKRDSPMILSANSQGTVKVLVLAA
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgggcggaggagcgatggtgccgacaggggtgaagatggagctaatgtctgctgacgaa
acgggggcatttgagaaggaggctccgccggacaaggatatgatgtgtccgatatgcatt
caggtgataagggacgcgttcctcactgcttgtggccatagcttctgccacagctgcatc
gtcactcatctcggaatcaagagcgactgtccttgctgcggtcaatacctcaccccaaac
ctcatcttccctaatttcttgctcgacaagttgttgagaaaatcgtccgcgtatatgata
gagaggaccggatctccgttggagcatctgcgccggagattgcatgagggttgcgatatg
tcaattagagaggtggaagggttgttgtctcttctcgaagagaagaagaggaaaatggag
ctgcaagagtccgagtcgggcatggagatcatggttgggttcttgcattcccttggaagg
caaaagctagaggagctcaatgagatacaaactgatcttgattacattaaggaggacctg
attgcggtggagagacgtagatttgaactattcaggcaacaacatgagaggtcattgcag
agtgatgacattgtctataatgcgcaatatgtgcaagcgcagatgagttctatcaattta
catagcaacagggctgttgtaaatgatgatgaaactcctacaaggtctatgcagcctata
aatccaccaggagaactgtcgacggcaaggaaaaggcgtgtccgttcacagttcaacgac
ctagaagagtgttacttacaaaagcggcgaaatgggaacaaacaaggggatttagatgct
atggatatagaagattataatccaggccttgaagacttttacgctatgctaaagggcttt
acaaaatacagtcgattgagggtcatttctgaactgagacagggtgatatttttcactct
gcaaatattgtgtcaagtatagaatttgatcgagacgaggaattgtttgctactgctggg
gtttcacggtgcatcaaggtttttgagttttcctcggtgattaatgaacctgaagatatc
cactgtgctgtcgaagagatatccacacgatccaaacttagttgcttgagttggaacaag
tacgctaaaaaccaaattgctagtagtgactacgaggggatagtaacagtttgggatgta
aatactcgtcagagtgtgatggaatatgaagaacatgaaaagcgagcttggagcgtcgat
ttctcaagcaccgatccgtcaatgcttgtgtctggaagtgatgactgcaaggtcaaaatt
tggtgcacaaatcaagaagaaagtgctttgaacatcaacatgaaggcaaacatttgttct
gtcaagtataatcccggatccagctttttcgttgcggttggttctgcagatcatcacatt
cattattatgacttgagaaatatcagccaaccactgcatgtatttagcgggcataggaaa
gctgtttcgtacgtgaaattcttgtctaacactgaacttgcttctgcatcgactgacagc
acattgcgattgtgggatgtaaagaagaacttgccgttatgcacgtacagaggtcacatg
aatgagaagaactttgtaggcctcgcagtgagtaatgactacattgcttgcggcagcgag
accaatgaagtgttcgtttatcacaagggtatcccaaaacctatggcttggcataaattt
gtctcttcggatttaaactacgaagacgatggtgcaggatcatacttcatcagtgctgtg
tgttggaagagggacagtccaatgatactgtcagcaaacagtcaaggaacagttaaagtt
cttgtccttgcagcctga
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